Epigenetics as a mediator of plasticity in cancer

AP Feinberg, A Levchenko - Science, 2023 - science.org
The concept of an epigenetic landscape describing potential cellular fates arising from
pluripotent cells, first advanced by Conrad Waddington, has evolved in light of experiments …

The interplay of epigenetic marks during stem cell differentiation and development

Y Atlasi, HG Stunnenberg - Nature Reviews Genetics, 2017 - nature.com
Chromatin, the template for epigenetic regulation, is a highly dynamic entity that is constantly
reshaped during early development and differentiation. Epigenetic modification of chromatin …

Reprogramming to recover youthful epigenetic information and restore vision

Y Lu, B Brommer, X Tian, A Krishnan, M Meer, C Wang… - Nature, 2020 - nature.com
Ageing is a degenerative process that leads to tissue dysfunction and death. A proposed
cause of ageing is the accumulation of epigenetic noise that disrupts gene expression …

TET enzymes, TDG and the dynamics of DNA demethylation

RM Kohli, Y Zhang - Nature, 2013 - nature.com
DNA methylation has a profound impact on genome stability, transcription and development.
Although enzymes that catalyse DNA methylation have been well characterized, those that …

[HTML][HTML] Reversing DNA methylation: mechanisms, genomics, and biological functions

H Wu, Y Zhang - Cell, 2014 - cell.com
Methylation of cytosines in the mammalian genome represents a key epigenetic modification
and is dynamically regulated during development. Compelling evidence now suggests that …

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription

WA Pastor, L Aravind, A Rao - Nature reviews Molecular cell biology, 2013 - nature.com
In many organisms, the methylation of cytosine in DNA has a key role in silencing'parasitic'
DNA elements, regulating transcription and establishing cellular identity. The recent …

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells

K Blaschke, KT Ebata, MM Karimi, JA Zepeda-Martínez… - Nature, 2013 - nature.com
DNA methylation is a heritable epigenetic modification involved in gene silencing,
imprinting, and the suppression of retrotransposons. Global DNA demethylation occurs in …

Dedifferentiation and reprogramming: origins of cancer stem cells

D Friedmann‐Morvinski, IM Verma - EMBO reports, 2014 - embopress.org
Regenerative medicine aims to replace the lost or damaged cells in the human body
through a new source of healthy transplanted cells or by endogenous repair. Although …

ngs. plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

L Shen, N Shao, X Liu, E Nestler - BMC genomics, 2014 - Springer
Background Understanding the relationship between the millions of functional DNA
elements and their protein regulators, and how they work in conjunction to manifest diverse …

H3K36 methylation maintains cell identity by regulating opposing lineage programmes

MS Hoetker, M Yagi, B Di Stefano, J Langerman… - Nature cell …, 2023 - nature.com
The epigenetic mechanisms that maintain differentiated cell states remain incompletely
understood. Here we employed histone mutants to uncover a crucial role for H3K36 …