Drivers of change in estuarine‐coastal ecosystems: Discoveries from four decades of study in San Francisco Bay

JE Cloern, AD Jassby - Reviews of Geophysics, 2012 - Wiley Online Library
Poised at the interface of rivers, ocean, atmosphere and dense human settlement, estuaries
are driven by a large array of natural and anthropogenic forces. San Francisco Bay …

Phytoplankton bloom dynamics in coastal ecosystems: a review with some general lessons from sustained investigation of San Francisco Bay, California

JE Cloern - Reviews of Geophysics, 1996 - Wiley Online Library
Phytoplankton blooms are prominent features of biological variability in shallow coastal
ecosystems such as estuaries, lagoons, bays, and tidal rivers. Long‐term observation and …

Phytoplankton primary production in the world's estuarine-coastal ecosystems

JE Cloern, SQ Foster, AE Kleckner - Biogeosciences, 2014 - bg.copernicus.org
Estuaries are biogeochemical hot spots because they receive large inputs of nutrients and
organic carbon from land and oceans to support high rates of metabolism and primary …

Microphytobenthos: the ecological role of the “secret garden” of unvegetated, shallow-water marine habitats. I. Distribution, abundance and primary production

HL MacIntyre, RJ Geider, DC Miller - Estuaries, 1996 - Springer
The microphytobenthos consists of unicellular eukaryotic algae and cyanobacteria that grow
within the upper several millimeters of illuminated sediments, typically appearing only as a …

Stable carbon and nitrogen isotope composition of aquatic and terrestrial plants of the San Francisco Bay estuarine system

JE Cloern, EA Canuel, D Harris - Limnology and oceanography, 2002 - Wiley Online Library
We report measurements of seasonal variability in the C‐N stable isotope ratios of plants
collected across the habitat mosaic of San Francisco Bay, its marshes, and its tributary river …

5.04-Carbon dioxide and methane dynamics in estuaries

A Borges, G Abril - 9780080878850, 2011 - orbi.uliege.be
Estuaries profoundly transform the large amounts of carbon delivered from rivers before their
transfer to the adjacent coastal zone. As a consequence of the complex biogeochemical …

Relative abundance and diversity of ammonia‐oxidizing archaea and bacteria in the San Francisco Bay estuary

AC Mosier, CA Francis - Environmental microbiology, 2008 - Wiley Online Library
Ammonia oxidation in marine and estuarine sediments plays a pivotal role in the cycling and
removal of nitrogen. Recent reports have shown that the newly discovered ammonia …

Isohaline position as a habitat indicator for estuarine populations

AD Jassby, WJ Kimmerer, SG Monismith… - Ecological …, 1995 - Wiley Online Library
Populations of native and introduced aquatic organisms in the San Francisco
Bay/Sacramento‐San Joaquin Delta Estuary (" Bay/Delta") have undergone significant …

Effects of freshwater flow on abundance of estuarine organisms: physical effects or trophic linkages?

WJ Kimmerer - Marine Ecology Progress Series, 2002 - int-res.com
All ecosystems are influenced by physical forcing. Estuarine ecosystems respond most
strongly on an interannual timescale to variability in freshwater flow. Several mechanisms for …

Phytoplankton community ecology: principles applied in San Francisco Bay

JE Cloern, R Dufford - Marine Ecology Progress Series, 2005 - int-res.com
In his seminal 1961 paper 'The paradox of the plankton'Am Nat 95: 137-147, GE Hutchinson
asked why many species of phytoplankton can coexist while competing for a small number …