Effective multi-modal clustering method via skip aggregation network for parallel scRNA-seq and scATAC-seq data

D Hu, K Liang, Z Dong, J Wang, Y Zhao… - Briefings in …, 2024 - academic.oup.com
In recent years, there has been a growing trend in the realm of parallel clustering analysis
for single-cell RNA-seq (scRNA) and single-cell Assay of Transposase Accessible …

Dual alignment feature embedding network for multi-omics data clustering

Y Xiao, D Yang, J Li, X Zou, H Zhou, C Tang - Knowledge-Based Systems, 2025 - Elsevier
Multi-omics data clustering, with its capability to utilize the biological information of cross-
omics to partition cells into their respective clusters, has attracted considerable attention due …

Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings

NJ LeRoy, JP Smith, G Zheng, J Rymuza… - NAR Genomics and …, 2024 - academic.oup.com
Data from the single-cell assay for transposase-accessible chromatin using sequencing
(scATAC-seq) are now widely available. One major computational challenge is dealing with …

scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data

S Xu, J Liu, J Zhang - Proceedings of the 33rd ACM International …, 2024 - dl.acm.org
Single-cell sequencing technologies have revolutionized genomics by enabling the
simultaneous profiling of various molecular modalities within individual cells. Their …