Coalescent methods for estimating phylogenetic trees

L Liu, L Yu, L Kubatko, DK Pearl, SV Edwards - Molecular phylogenetics …, 2009 - Elsevier
We review recent models to estimate phylogenetic trees under the multispecies coalescent.
Although the distinction between gene trees and species trees has come to the fore of …

The application of eDNA for monitoring aquatic non-indigenous species: practical and policy considerations

VG Fonseca, PI Davison, V Creach, D Stone, D Bass… - Diversity, 2023 - mdpi.com
Aquatic non-indigenous species (NIS) threaten biodiversity, ecosystem functions, and the
economy worldwide. Monitoring NIS is of immediate concern to identify newly arriving …

[引用][C] Phylogeography: The History and Formation of Species

JC Avise - 2000 - books.google.com
Phylogeography is a discipline concerned with various relationships between gene
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …

Phenotypic characterization and the principles of comparative systematics

BJ Tindall, J Sikorski, RA Smibert… - Methods for general …, 2007 - Wiley Online Library
In performing phenotypic characterization tests, the organisms used for the inoculation of
test media should be from fresh transfers and in good physiological condition. The methods …

[图书][B] Earthworm ecology

CA Edwards - 1997 - taylorfrancis.com
Earthworm Ecology, Second Edition updates the most comprehensive work available on
earthworm ecology with extensive revisions of the original chapters. New chapters analyze …

Is a new and general theory of molecular systematics emerging?

SV Edwards - Evolution, 2009 - academic.oup.com
The advent and maturation of algorithms for estimating species trees—phylogenetic trees
that allow gene tree heterogeneity and whose tips represent lineages, populations and …

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic …

ME Alfaro, S Zoller, F Lutzoni - Molecular biology and evolution, 2003 - academic.oup.com
Abstract Bayesian Markov chain Monte Carlo sampling has become increasingly popular in
phylogenetics as a method for both estimating the maximum likelihood topology and for …

Success of phylogenetic methods in the four-taxon case

JP Huelsenbeck, DM Hillis - Systematic Biology, 1993 - academic.oup.com
The success of 16 methods of phylogenetic inference was examined using consistency and
simulation analysis. Success—the frequency with which a tree-making method correctly …

Taxon sampling and the accuracy of phylogenetic analyses

TA Heath, SM Hedtke, DM Hillis - Journal of systematics and evolution, 2008 - jse.ac.cn
Appropriate and extensive taxon sampling is one of the most important determinants of
accurate phylogenetic estimation. In addition, accuracy of inferences about evolutionary …

[图书][B] Cladistics: the theory and practice of parsimony analysis

IJ Kitching - 1998 - books.google.com
Cladistics aims to reconstruct genealogies based on common ancestry, thus revealing the
phylogenetic relationships between taxa. Its applications vary from linguistic analysis to the …