Genesis, effects and fates of repeats in prokaryotic genomes
DNA repeats are causes and consequences of genome plasticity. Repeats are created by
intrachromosomal recombination or horizontal transfer. They are targeted by recombination …
intrachromosomal recombination or horizontal transfer. They are targeted by recombination …
Small mobile sequences in bacteria display diverse structure/function motifs
N Delihas - Molecular microbiology, 2008 - Wiley Online Library
Small repeat sequences in bacterial genomes, which represent non‐autonomous mobile
elements, have close similarities to archaeon and eukaryotic miniature inverted repeat …
elements, have close similarities to archaeon and eukaryotic miniature inverted repeat …
Impact of small repeat sequences on bacterial genome evolution
N Delihas - Genome biology and evolution, 2011 - academic.oup.com
Intergenic regions of prokaryotic genomes carry multiple copies of terminal inverted repeat
(TIR) sequences, the nonautonomous miniature inverted-repeat transposable element …
(TIR) sequences, the nonautonomous miniature inverted-repeat transposable element …
Genomic characterization of the Yersinia genus
PE Chen, C Cook, AC Stewart, N Nagarajan… - Genome Biology, 2010 - Springer
Background New DNA sequencing technologies have enabled detailed comparative
genomic analyses of entire genera of bacterial pathogens. Prior to this study, three species …
genomic analyses of entire genera of bacterial pathogens. Prior to this study, three species …
Mobility and Generation of Mosaic Non-Autonomous Transposons by Tn3-Derived Inverted-Repeat Miniature Elements (TIMEs)
M Szuplewska, M Ludwiczak, K Lyzwa, J Czarnecki… - PLoS …, 2014 - journals.plos.org
Functional transposable elements (TEs) of several Pseudomonas spp. strains isolated from
black shale ore of Lubin mine and from post-flotation tailings of Zelazny Most in Poland …
black shale ore of Lubin mine and from post-flotation tailings of Zelazny Most in Poland …
Stenotrophomonas maltophilia genomes: a start-up comparison
F Rocco, E De Gregorio, B Colonna… - International journal of …, 2009 - Elsevier
The whole DNA sequences of 2 Stenotrophomonas maltophilia strains isolated from the
blood of a cancer patient (K279a) and the poplar Populus trichocarpa (R551-3) have been …
blood of a cancer patient (K279a) and the poplar Populus trichocarpa (R551-3) have been …
PCR-based rapid genotyping of Stenotrophomonas maltophiliaisolates
E Roscetto, F Rocco, MS Carlomagno, M Casalino… - BMC microbiology, 2008 - Springer
Background All bacterial genomes contain repetitive sequences which are members of
specific DNA families. Such repeats may occur as single units, or found clustered in multiple …
specific DNA families. Such repeats may occur as single units, or found clustered in multiple …
GTAG-and CGTC-tagged palindromic DNA repeats in prokaryotes
PP Di Nocera, E De Gregorio, F Rocco - BMC genomics, 2013 - Springer
Abstract Background REPs (Repetitive Extragenic Palindromes) are small (20–40 bp)
palindromic repeats found in high copies in some prokaryotic genomes, hypothesized to …
palindromic repeats found in high copies in some prokaryotic genomes, hypothesized to …
[HTML][HTML] The 3′ UTR of vigR is required for virulence in Staphylococcus aureus and has expanded through STAR sequence repeat insertions
Infections caused by methicillin-resistant Staphylococcus aureus (MRSA) are alarmingly
common, and treatment is confined to last-line antibiotics. Vancomycin is the treatment of …
common, and treatment is confined to last-line antibiotics. Vancomycin is the treatment of …
A giant family of short palindromic sequences in Stenotrophomonas maltophilia
F Rocco, E De Gregorio… - FEMS microbiology …, 2010 - academic.oup.com
The genome of Stenotrophomonas maltophilia is peppered with palindromic elements
called SMAG (Stenotrophomonas maltophilia GTAG) because they carry at one terminus the …
called SMAG (Stenotrophomonas maltophilia GTAG) because they carry at one terminus the …