Human genome sequencing in health and disease

C Gonzaga-Jauregui, JR Lupski… - Annual review of …, 2012 - annualreviews.org
Following the “finished,” euchromatic, haploid human reference genome sequence, the
rapid development of novel, faster, and cheaper sequencing technologies is making …

Genome interpretation using in silico predictors of variant impact

P Katsonis, K Wilhelm, A Williams, O Lichtarge - Human genetics, 2022 - Springer
Estimating the effects of variants found in disease driver genes opens the door to
personalized therapeutic opportunities. Clinical associations and laboratory experiments …

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics …

S Richards, N Aziz, S Bale, D Bick, S Das… - Genetics in …, 2015 - nature.com
Abstract Disclaimer: These ACMG Standards and Guidelines were developed primarily as
an educational resource for clinical laboratory geneticists to help them provide quality …

Predicting functional effect of human missense mutations using PolyPhen‐2

I Adzhubei, DM Jordan… - Current protocols in …, 2013 - Wiley Online Library
Abstract PolyPhen‐2 (Polymorphism Phenotyping v2), available as software and via a Web
server, predicts the possible impact of amino acid substitutions on the stability and function …

SIFT web server: predicting effects of amino acid substitutions on proteins

NL Sim, P Kumar, J Hu, S Henikoff… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Sorting Intolerant from Tolerant (SIFT) algorithm predicts the effect of coding
variants on protein function. It was first introduced in 2001, with a corresponding website that …

Genic intolerance to functional variation and the interpretation of personal genomes

S Petrovski, Q Wang, EL Heinzen, AS Allen… - PLoS …, 2013 - journals.plos.org
A central challenge in interpreting personal genomes is determining which mutations most
likely influence disease. Although progress has been made in scoring the functional impact …

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models

HA Shihab, J Gough, DN Cooper, PD Stenson… - Human …, 2013 - Wiley Online Library
The rate at which nonsynonymous single nucleotide polymorphisms (ns SNP s) are being
identified in the human genome is increasing dramatically owing to advances in whole …

Rare variants in CFI, C3 and C9 are associated with high risk of advanced age-related macular degeneration

JM Seddon, Y Yu, EC Miller, R Reynolds, PL Tan… - Nature …, 2013 - nature.com
To define the role of rare variants in advanced age-related macular degeneration (AMD)
risk, we sequenced the exons of 681 genes within all reported AMD loci and related …

Exome sequencing and the genetic basis of complex traits

A Kiezun, K Garimella, R Do, NO Stitziel, BM Neale… - Nature …, 2012 - nature.com
Exome sequencing and the genetic basis of complex traits | Nature Genetics Skip to main
content Thank you for visiting nature.com. You are using a browser version with limited support …

Comparison of predicted and actual consequences of missense mutations

LA Miosge, MA Field, Y Sontani… - Proceedings of the …, 2015 - National Acad Sciences
Each person's genome sequence has thousands of missense variants. Practical
interpretation of their functional significance must rely on computational inferences in the …