Mycobacterium bovis: From Genotyping to Genome Sequencing

AMS Guimaraes, CK Zimpel - Microorganisms, 2020 - mdpi.com
Mycobacterium bovis is the main pathogen of bovine, zoonotic, and wildlife tuberculosis.
Despite the existence of programs for bovine tuberculosis (bTB) control in many regions, the …

A bioinformatics whole-genome sequencing workflow for clinical mycobacterium tuberculosis complex isolate analysis, validated using a reference collection …

B Bogaerts, T Delcourt, K Soetaert… - Journal of Clinical …, 2021 - Am Soc Microbiol
The use of whole-genome sequencing (WGS) for routine typing of bacterial isolates has
increased substantially in recent years. For Mycobacterium tuberculosis (MTB), in particular …

CRISPRbuilder-TB: “CRISPR-builder for tuberculosis”. Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA

C Guyeux, C Sola, C Noûs… - PLoS computational …, 2021 - journals.plos.org
Mycobacterium tuberculosis complex (MTC) CRISPR locus diversity has long been studied
solely investigating the presence/absence of a known set of spacers. Unveiling the genetic …

[HTML][HTML] simpiTB–a pipeline designed to extract meaningful information from whole genome sequencing data of Mycobacterium tuberculosis complex, allows to …

D Couvin, E Stattner, W Segretier, D Cazenave… - Infection, Genetics and …, 2023 - Elsevier
Data obtained from new sequencing technologies are evolving rapidly, leading to the
development of specific bioinformatic tools, pipelines and softwares. Several algorithms and …

Mechanisms underlying the inhibitory effects of Cd2+ on prodigiosin synthesis in Serratia marcescens KMR-3

G Zhu, W Tan, L Xie, C Ma, X Chen, S Zhang… - Journal of Inorganic …, 2022 - Elsevier
Abstract Prodigiosin (2-methyl-3-pentyl-6-methoxyprodiginine), a red-colored microbial
pigment, is produced in large quantities by Serratia marcescens KMR-3. This bacterium can …

Bridging the gap between molecular and genomic epidemiology in tuberculosis: inferring MIRU-VNTR patterns from genomic data

S Buenestado-Serrano, M Martínez-Lirola… - Journal of Clinical …, 2024 - journals.asm.org
The transition from MIRU-VNTR-based epidemiology studies in tuberculosis (TB) to genomic
epidemiology has transformed how we track transmission. However, short-read sequencing …

Evaluation of a gene-by-gene approach for prospective whole-genome sequencing-based surveillance of multidrug resistant Mycobacterium tuberculosis

R Macedo, M Pinto, V Borges, A Nunes, O Oliveira… - Tuberculosis, 2019 - Elsevier
Whole-genome sequencing (WGS) offers unprecedented resolution for tracking
Mycobacterium tuberculosis transmission and antibiotic-resistance spread. Still, the …

Genotyping of Mycobacterium tuberculosis spreading in Hanoi, Vietnam using conventional and whole genome sequencing methods

S Maeda, M Hijikata, NT Le Hang, PH Thuong… - Infection, Genetics and …, 2020 - Elsevier
Hanoi is the capital of Vietnam, one of the 30 countries with a high tuberculosis (TB) burden.
Fundamental data on the molecular epidemiology of the disease is required for future TB …

First insights on the genetic diversity of MDR Mycobacterium tuberculosis in Lebanon

B Panossian, T Salloum, GF Araj, G Khazen… - BMC Infectious …, 2018 - Springer
Background Lebanon hosts a heterogeneous population coming from underdeveloped and
developing countries, resulting in increasing incidences of tuberculosis over the past years …

Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families

D Couvin, W Segretier, E Stattner, N Rastogi - Database, 2020 - academic.oup.com
Bioinformatic tools are currently being developed to better understand the Mycobacterium
tuberculosis complex (MTBC). Several approaches already exist for the identification of …