Bricks and blueprints: methods and standards for DNA assembly

A Casini, M Storch, GS Baldwin, T Ellis - Nature Reviews Molecular Cell …, 2015 - nature.com
DNA assembly is a key part of constructing gene expression systems and even whole
chromosomes. In the past decade, a plethora of powerful new DNA assembly methods …

DNA assembly for synthetic biology: from parts to pathways and beyond

T Ellis, T Adie, GS Baldwin - Integrative Biology, 2011 - academic.oup.com
The assembly of DNA from small fragments into large constructs has seen significant recent
development, becoming a pivotal technology in the ability to implement the vision of …

j5 DNA assembly design automation software

NJ Hillson, RD Rosengarten, JD Keasling - ACS synthetic biology, 2012 - ACS Publications
Recent advances in Synthetic Biology have yielded standardized and automatable DNA
assembly protocols that enable a broad range of biotechnological research and …

Synthetic biology: an emerging engineering discipline

AA Cheng, TK Lu - Annual review of biomedical engineering, 2012 - annualreviews.org
Over the past decade, synthetic biology has emerged as an engineering discipline for
biological systems. Compared with other substrates, biology poses a unique set of …

[图书][B] A first course in systems biology

E Voit - 2017 - taylorfrancis.com
A First Course in Systems Biology is an introduction for advanced undergraduate and
graduate students to the growing field of systems biology. Its main focus is the development …

Eugene–a domain specific language for specifying and constraining synthetic biological parts, devices, and systems

L Bilitchenko, A Liu, S Cheung, E Weeding, B Xia… - PloS one, 2011 - journals.plos.org
Background Synthetic biological systems are currently created by an ad-hoc, iterative
process of specification, design, and assembly. These systems would greatly benefit from a …

A versatile microfluidic device for automating synthetic biology

SCC Shih, G Goyal, PW Kim, N Koutsoubelis… - ACS synthetic …, 2015 - ACS Publications
New microbes are being engineered that contain the genetic circuitry, metabolic pathways,
and other cellular functions required for a wide range of applications such as producing …

Design automation in synthetic biology

E Appleton, C Madsen, N Roehner… - Cold Spring Harbor …, 2017 - cshperspectives.cshlp.org
Design automation refers to a category of software tools for designing systems that work
together in a workflow for designing, building, testing, and analyzing systems with a target …

Scar-less multi-part DNA assembly design automation

NJ Hillson - US Patent 9,361,427, 2016 - Google Patents
(*) Notice: Subject to any disclaimer, the term of this Hillson et al. 5 DNA assembly design
automation software. ACS patent is extended or adjusted under 35 Synthetic Biology, Dec …

Standard biological parts knowledgebase

M Galdzicki, C Rodriguez, D Chandran, HM Sauro… - PloS one, 2011 - journals.plos.org
We have created the Knowledgebase of Standard Biological Parts (SBPkb) as a publically
accessible Semantic Web resource for synthetic biology (sbolstandard. org). The SBPkb …