RNA can fold back on itself to adopt a wide range of structures. These range from relatively
simple hairpins to intricate 3D folds and can be accompanied by regulatory interactions with …

Alternative splicing is an important regulatory process that produces multiple transcripts from
a single gene, significantly modulating the transcriptome and potentially the proteome …

SQANTI3 is a tool designed for the quality control, curation and annotation of long-read
transcript models obtained with third-generation sequencing technologies. Leveraging its …

How the noncoding genome affects cellular functions is a key biological question. A
particular challenge is to distinguish the effects of noncoding DNA elements from long …

The activities of RNA polymerases shape the epigenetic landscape of genomes with
profound consequences for genome integrity and gene expression. A fundamental event …

This review is an attempt to establish concepts of splicing and alternative splicing giving
proper relevance to introns, the key actors in this mechanism. It might also work as a guide …

RNA-binding proteins (RBPs) have a broad impact on most biochemical, physiological, and
developmental processes in a plant's life. RBPs engage in an on-off relationship with their …

The ease and throughput of single-cell genomics have steadily improved, and its current
trajectory suggests that surveying single-cell populations will become routine. We discuss …

Light signals perceived by a group of photoreceptors have profound effects on the
physiology, growth, and development of plants. The red/far-red light–absorbing …

Transposable elements (TEs) are accumulated in both intergenic and intragenic regions in
plant genomes. Intragenic TEs often act as regulatory elements of associated genes and are …