Phylogenomics and the reconstruction of the tree of life

F Delsuc, H Brinkmann, H Philippe - Nature Reviews Genetics, 2005 - nature.com
As more complete genomes are sequenced, phylogenetic analysis is entering a new era—
that of phylogenomics. One branch of this expanding field aims to reconstruct the …

The current state of insect molecular systematics: a thriving Tower of Babel

MS Caterino, S Cho, FAH Sperling - Annual review of …, 2000 - annualreviews.org
▪ Abstract Insect molecular systematics has undergone remarkable recent growth. Advances
in methods of data generation and analysis have led to the accumulation of large amounts of …

[图书][B] Phylogenetics: theory and practice of phylogenetic systematics

EO Wiley, BS Lieberman - 2011 - books.google.com
The long-awaited revision of the industry standard on phylogenetics Since the publication of
the first edition of this landmark volume more than twenty-five years ago, phylogenetic …

[图书][B] Mammals from the age of dinosaurs: origins, evolution, and structure

Z Kielan-Jaworowska, RL Cifelli, ZX Luo - 2004 - degruyter.com
Following our traditional concept of Mammalia, and thus including a number of forms known
only by fossils of the Mesozoic, the earliest mammals are from the Late Triassic, a bit over …

A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach

GH Sung, JM Sung, NL Hywel-Jones… - Molecular phylogenetics …, 2007 - Elsevier
Multi-gene phylogenetic analyses were conducted to address the evolution of
Clavicipitaceae (Ascomycota). Data are presented here for approximately 5900 base pairs …

[图书][B] Cladistics: the theory and practice of parsimony analysis

IJ Kitching - 1998 - books.google.com
Cladistics aims to reconstruct genealogies based on common ancestry, thus revealing the
phylogenetic relationships between taxa. Its applications vary from linguistic analysis to the …

Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)

RJ Mason-Gamer, EA Kellogg - Systematic biology, 1996 - academic.oup.com
Four molecular data sets are available for the diploid intersterile genera of the cereal grain
tribe Triticeae, and there are numerous differences among the four published trees. All six …

Phylogenetic analysis at deep timescales: unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum

J Gatesy, MS Springer - Molecular phylogenetics and evolution, 2014 - Elsevier
Large datasets are required to solve difficult phylogenetic problems that are deep in the Tree
of Life. Currently, two divergent systematic methods are commonly applied to such datasets …

Can three incongruence tests predict when data should be combined?

CW Cunningham - Molecular Biology and Evolution, 1997 - academic.oup.com
Advocates of conditional combination have argued that testing for incongruence between
data partitions is an important step in data exploration. Unless the partitions have had …

Phylogenetic incongruence: window into genome history and molecular evolution

JF Wendel, JJ Doyle - Molecular systematics of plants II: DNA sequencing, 1998 - Springer
The field of systematic biology has been revitalized and transformed during the last few
decades by the confluence of phylogenetic thinking with ready access to the tools of …