Haloalkane dehalogenases: biotechnological applications

T Koudelakova, S Bidmanova, P Dvorak… - Biotechnology …, 2013 - Wiley Online Library
Abstract Haloalkane dehalogenases (EC 3.8. 1.5, HLDs) are α/β‐hydrolases which act to
cleave carbon‐halogen bonds. Due to their unique catalytic mechanism, broad substrate …

Marine-derived biocatalysts: importance, accessing, and application in aromatic pollutant bioremediation

E Nikolaivits, M Dimarogona, N Fokialakis… - Frontiers in …, 2017 - frontiersin.org
The aim of the present review is to highlight the potential use of marine biocatalysts (whole
cells or enzymes) as an alternative bioprocess for the degradation of aromatic pollutants …

Exploration of enzyme diversity by integrating bioinformatics with expression analysis and biochemical characterization

P Vanacek, E Sebestova, P Babkova, S Bidmanova… - Acs …, 2018 - ACS Publications
Millions of protein sequences are being discovered at an incredible pace, representing an
inexhaustible source of biocatalysts. Here, we describe an integrated system for automated …

Substrate specificity of haloalkane dehalogenases

T Koudelakova, E Chovancova, J Brezovsky… - Biochemical …, 2011 - portlandpress.com
An enzyme's substrate specificity is one of its most important characteristics. The quantitative
comparison of broad-specificity enzymes requires the selection of a homogenous set of …

Phylogenetic analysis of haloalkane dehalogenases

E Chovancová, J Kosinski, JM Bujnicki… - PROTEINS …, 2007 - Wiley Online Library
Haloalkane dehalogenases (HLDs) are enzymes that catalyze the cleavage of carbon–
halogen bonds by a hydrolytic mechanism. Although comparative biochemical analyses …

Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics

M Vasina, P Vanacek, J Hon, D Kovar, H Faldynova… - Chem Catalysis, 2022 - cell.com
Next-generation sequencing doubles genomic databases every 2.5 years. The
accumulation of sequence data provides a unique opportunity to identify interesting …

Ancestral haloalkane dehalogenases show robustness and unique substrate specificity

P Babkova, E Sebestova, J Brezovsky… - …, 2017 - Wiley Online Library
Ancestral sequence reconstruction (ASR) represents a powerful approach for empirical
testing structure‐function relationships of diverse proteins. We employed ASR to predict …

Properties and biotechnological applications of natural and engineered haloalkane dehalogenases

Y Nagata, Y Ohtsubo, M Tsuda - Applied microbiology and biotechnology, 2015 - Springer
Haloalkane dehalogenases (HLDs) convert halogenated compounds to corresponding
alcohols, halides, and protons. They belong to α/β-hydrolases, and their principal catalytic …

Multimeric structure of a subfamily III haloalkane dehalogenase‐like enzyme solved by combination of cryo‐EM and x‐ray crystallography

K Chmelova, T Gao, M Polak… - Protein …, 2023 - Wiley Online Library
Haloalkane dehalogenase (HLD) enzymes employ an SN2 nucleophilic substitution
mechanism to erase halogen substituents in diverse organohalogen compounds. Subfamily …

Biochemical Characterization of a Haloalkane Dehalogenase DadB from Alcanivorax dieselolei B-5

A Li, Z Shao - PloS one, 2014 - journals.plos.org
Recently, we found that Alcanivorax bacteria from various marine environments were
capable of degrading halogenated alkanes. Genome sequencing of A. dieselolei B-5 …