RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Translation in prokaryotes

MV Rodnina - Cold Spring Harbor perspectives in …, 2018 - cshperspectives.cshlp.org
This review summarizes our current understanding of translation in prokaryotes, focusing on
the mechanistic and structural aspects of each phase of translation: initiation, elongation …

The elongation, termination, and recycling phases of translation in eukaryotes

TE Dever, R Green - Cold Spring Harbor perspectives in …, 2012 - cshperspectives.cshlp.org
This work summarizes our current understanding of the elongation and termination/recycling
phases of eukaryotic protein synthesis. We focus here on recent advances in the field. In …

Structural basis for stop codon recognition in eukaryotes

A Brown, S Shao, J Murray, RS Hegde… - Nature, 2015 - nature.com
Termination of protein synthesis occurs when a translating ribosome encounters one of
three universally conserved stop codons: UAA, UAG or UGA. Release factors recognize stop …

What recent ribosome structures have revealed about the mechanism of translation

TM Schmeing, V Ramakrishnan - Nature, 2009 - nature.com
The high-resolution structures of ribosomal subunits published in 2000 have revolutionized
the field of protein translation. They facilitated the determination and interpretation of …

Structure and function of the mitochondrial ribosome

BJ Greber, N Ban - Annual review of biochemistry, 2016 - annualreviews.org
Mitochondrial ribosomes (mitoribosomes) perform protein synthesis inside mitochondria, the
organelles responsible for energy conversion and adenosine triphosphate production in …

Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles

X Bai, IS Fernandez, G McMullan, SHW Scheres - elife, 2013 - elifesciences.org
Although electron cryo-microscopy (cryo-EM) single-particle analysis has become an
important tool for structural biology of large and flexible macro-molecular assemblies, the …

Structural basis of MALAT1 RNA maturation and mascRNA biogenesis

I Skeparnias, C Bou-Nader, DG Anastasakis… - Nature Structural & …, 2024 - nature.com
The metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) long noncoding
RNA (lncRNA) has key roles in regulating transcription, splicing, tumorigenesis, etc. Its …

The eRF1 degrader SRI-41315 acts as a molecular glue at the ribosomal decoding center

JPL Coelho, MCJ Yip, K Oltion, J Taunton… - Nature Chemical …, 2024 - nature.com
Translation termination is an essential cellular process, which is also of therapeutic interest
for diseases that manifest from premature stop codons. In eukaryotes, translation termination …

Structural basis of the translational elongation cycle

RM Voorhees, V Ramakrishnan - Annual review of biochemistry, 2013 - annualreviews.org
The sequential addition of amino acids to a growing polypeptide chain is carried out by the
ribosome in a complicated multistep process called the elongation cycle. It involves accurate …