Integrator is a global promoter-proximal termination complex

EJ Wagner, L Tong, K Adelman - Molecular cell, 2023 - cell.com
Integrator is a metazoan-specific protein complex capable of inducing termination at all
RNAPII-transcribed loci. Integrator recognizes paused, promoter-proximal RNAPII and …

Genomic regulation of transcription and RNA processing by the multitasking Integrator complex

SA Welsh, A Gardini - Nature Reviews Molecular Cell Biology, 2023 - nature.com
In higher eukaryotes, fine-tuned activation of protein-coding genes and many non-coding
RNAs pivots around the regulated activity of RNA polymerase II (Pol II). The Integrator …

[HTML][HTML] Zc3h13 regulates nuclear RNA m6A methylation and mouse embryonic stem cell self-renewal

J Wen, R Lv, H Ma, H Shen, C He, J Wang, F Jiao… - Molecular cell, 2018 - cell.com
Summary N 6-methyladenosine (m 6 A) is an abundant modification in eukaryotic mRNA,
regulating mRNA dynamics by influencing mRNA stability, splicing, export, and translation …

[HTML][HTML] Genome-wide analyses identify KIF5A as a novel ALS gene

A Nicolas, KP Kenna, AE Renton, N Ticozzi, F Faghri… - Neuron, 2018 - cell.com
To identify novel genes associated with ALS, we undertook two lines of investigation. We
carried out a genome-wide association study comparing 20,806 ALS cases and 59,804 …

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

MV Kuleshov, MR Jones, AD Rouillard… - Nucleic acids …, 2016 - academic.oup.com
Enrichment analysis is a popular method for analyzing gene sets generated by genome-
wide experiments. Here we present a significant update to one of the tools in this domain …

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

AD Rouillard, GW Gundersen, NF Fernandez… - Database, 2016 - academic.oup.com
Genomics, epigenomics, transcriptomics, proteomics and metabolomics efforts rapidly
generate a plethora of data on the activity and levels of biomolecules within mammalian …

[HTML][HTML] The BioPlex network: a systematic exploration of the human interactome

EL Huttlin, L Ting, RJ Bruckner, F Gebreab, MP Gygi… - Cell, 2015 - cell.com
Protein interactions form a network whose structure drives cellular function and whose
organization informs biological inquiry. Using high-throughput affinity-purification mass …

Functions of bromodomain-containing proteins and their roles in homeostasis and cancer

T Fujisawa, P Filippakopoulos - Nature reviews Molecular cell biology, 2017 - nature.com
Bromodomains (BRDs) are evolutionarily conserved protein–protein interaction modules
that are found in a wide range of proteins with diverse catalytic and scaffolding functions and …

[HTML][HTML] A human interactome in three quantitative dimensions organized by stoichiometries and abundances

MY Hein, NC Hubner, I Poser, J Cox, N Nagaraj… - Cell, 2015 - cell.com
The organization of a cell emerges from the interactions in protein networks. The
interactome is critically dependent on the strengths of interactions and the cellular …

[HTML][HTML] Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

EY Chen, CM Tan, Y Kou, Q Duan, Z Wang… - BMC …, 2013 - Springer
Background System-wide profiling of genes and proteins in mammalian cells produce lists of
differentially expressed genes/proteins that need to be further analyzed for their collective …