Artificial intelligence in drug discovery: recent advances and future perspectives

J Jiménez-Luna, F Grisoni, N Weskamp… - Expert opinion on drug …, 2021 - Taylor & Francis
Introduction: Artificial intelligence (AI) has inspired computer-aided drug discovery. The
widespread adoption of machine learning, in particular deep learning, in multiple scientific …

Generative models for de novo drug design

X Tong, X Liu, X Tan, X Li, J Jiang, Z Xiong… - Journal of Medicinal …, 2021 - ACS Publications
Artificial intelligence (AI) is booming. Among various AI approaches, generative models
have received much attention in recent years. Inspired by these successes, researchers are …

[HTML][HTML] Integrating structure-based approaches in generative molecular design

M Thomas, A Bender, C de Graaf - Current Opinion in Structural Biology, 2023 - Elsevier
Generative molecular design for drug discovery and development has seen a recent
resurgence promising to improve the efficiency of the design-make-test-analyse cycle; by …

Deep Generative Models in De Novo Drug Molecule Generation

C Pang, J Qiao, X Zeng, Q Zou… - Journal of Chemical …, 2023 - ACS Publications
The discovery of new drugs has important implications for human health. Traditional
methods for drug discovery rely on experiments to optimize the structure of lead molecules …

DOCKSTRING: easy molecular docking yields better benchmarks for ligand design

M García-Ortegón, GNC Simm, AJ Tripp… - Journal of chemical …, 2022 - ACS Publications
The field of machine learning for drug discovery is witnessing an explosion of novel
methods. These methods are often benchmarked on simple physicochemical properties …

[HTML][HTML] Artificial intelligence for retrosynthesis prediction

Y Jiang, Y Yu, M Kong, Y Mei, L Yuan, Z Huang… - Engineering, 2023 - Elsevier
In recent years, there has been a dramatic rise in interest in retrosynthesis prediction with
artificial intelligence (AI) techniques. Unlike conventional retrosynthesis prediction …

Geometric deep learning for structure-based ligand design

AS Powers, HH Yu, P Suriana, RV Koodli… - ACS Central …, 2023 - ACS Publications
A pervasive challenge in drug design is determining how to expand a ligand─ a small
molecule that binds to a target biomolecule─ in order to improve various properties of the …

Exploring chemical space with score-based out-of-distribution generation

S Lee, J Jo, SJ Hwang - International Conference on …, 2023 - proceedings.mlr.press
A well-known limitation of existing molecular generative models is that the generated
molecules highly resemble those in the training set. To generate truly novel molecules that …

Hit and lead discovery with explorative rl and fragment-based molecule generation

S Yang, D Hwang, S Lee, S Ryu… - Advances in Neural …, 2021 - proceedings.neurips.cc
Recently, utilizing reinforcement learning (RL) to generate molecules with desired properties
has been highlighted as a promising strategy for drug design. Molecular docking program--a …

Identification of novel discoidin domain receptor 1 (DDR1) inhibitors using E-pharmacophore modeling, structure-based virtual screening, molecular dynamics …

H Nada, K Lee, L Gotina, AN Pae… - Computers in Biology and …, 2022 - Elsevier
Dysregulation of the discoidin domain receptor (DDR1), a collagen-activated receptor
tyrosine kinase, has been linked to several human cancer diseases including non-small cell …