High‐throughput metagenomics for identification of pathogens in the clinical settings

N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …

The diagnostic value of metagenomic next–generation sequencing in lower respiratory tract infection

Y Zheng, X Qiu, T Wang, J Zhang - Frontiers in cellular and infection …, 2021 - frontiersin.org
Lower respiratory tract infections are associated with high morbidity and mortality and
significant clinical harm. Due to the limited ability of traditional pathogen detection methods …

Integrating central nervous system metagenomics and host response for diagnosis of tuberculosis meningitis and its mimics

PS Ramachandran, A Ramesh, FV Creswell… - Nature …, 2022 - nature.com
The epidemiology of infectious causes of meningitis in sub-Saharan Africa is not well
understood, and a common cause of meningitis in this region, Mycobacterium tuberculosis …

Metagenomic Next-Generation Sequencing for the Diagnosis of Pneumocystis jirovecii Pneumonia in Non-HIV-Infected Patients: A Retrospective Study

J Jiang, L Bai, W Yang, W Peng, J An, Y Wu… - Infectious Diseases and …, 2021 - Springer
Introduction This study aimed to evaluate the utility of metagenomic next-generation
sequencing (mNGS) for the diagnosis of Pneumocystis jirovecii pneumonia (PJP) in non …

Molecular diagnostics in cerebrospinal fluid for the diagnosis of central nervous system infections

SE Olie, CØ Andersen, D van de Beek… - Clinical Microbiology …, 2024 - journals.asm.org
Central nervous system (CNS) infections can be caused by various pathogens, including
bacteria, viruses, fungi, and parasites. Molecular diagnostic methods are pivotal for …

Clinical metagenomics—challenges and future prospects

M Batool, J Galloway-Peña - Frontiers in Microbiology, 2023 - frontiersin.org
Infections lacking precise diagnosis are often caused by a rare or uncharacterized
pathogen, a combination of pathogens, or a known pathogen carrying undocumented or …

Metagenomic next-generation sequencing for diagnosis of pediatric meningitis and encephalitis: a review

K Graff, SR Dominguez… - Journal of the Pediatric …, 2021 - academic.oup.com
Metagenomic next-generation sequencing is a novel diagnostic test with the potential to
revolutionize the diagnosis of pediatric meningitis and encephalitis through unbiased …

Emerging Genotype IV Japanese Encephalitis Virus Outbreak in New South Wales, Australia

AR Howard-Jones, D Pham, N Jeoffreys, JS Eden… - Viruses, 2022 - mdpi.com
The detection of a new and unexpected Japanese encephalitis virus (JEV) outbreak in
March 2022 in Australia, where JEV is not endemic, demanded the rapid development of a …

Clinical metagenomics assessments improve diagnosis and outcomes in community-acquired pneumonia

F Xie, Z Duan, W Zeng, S Xie, M Xie, H Fu, Q Ye… - BMC Infectious …, 2021 - Springer
Background Identifying the causes of community-acquired pneumonia (CAP) is challenging
due to the disease's complex etiology and the limitations of traditional microbiological …

Clinical evaluation of a metagenomics-based assay for pneumonia management

Y Zhan, T Xu, F He, W Guan, Z Li, S Li, M Xie… - Frontiers in …, 2021 - frontiersin.org
Clinical value of metagenomic next-generation sequencing (mNGS) in pneumonia
management is still controversial. A prospective study was conducted to evaluate the clinical …