Unbiased spatial proteomics with single-cell resolution in tissues

A Mund, AD Brunner, M Mann - Molecular Cell, 2022 - cell.com
Mass spectrometry (MS)-based proteomics has become a powerful technology to quantify
the entire complement of proteins in cells or tissues. Here, we review challenges and recent …

Imaging flow cytometry

P Rees, HD Summers, A Filby, AE Carpenter… - Nature Reviews …, 2022 - nature.com
Imaging flow cytometry combines the high-event-rate nature of flow cytometry with the
advantages of single-cell image acquisition associated with microscopy. The measurement …

Image sensing with multilayer nonlinear optical neural networks

T Wang, MM Sohoni, LG Wright, MM Stein, SY Ma… - Nature …, 2023 - nature.com
Optical imaging is commonly used for both scientific and technological applications across
industry and academia. In image sensing, a measurement, such as of an object's position or …

Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas

JE Rood, A Hupalowska, A Regev - Cell, 2024 - cell.com
Comprehensively charting the biologically causal circuits that govern the phenotypic space
of human cells has often been viewed as an insurmountable challenge. However, in the last …

[HTML][HTML] The phenotypic landscape of essential human genes

L Funk, KC Su, J Ly, D Feldman, A Singh, B Moodie… - Cell, 2022 - cell.com
Understanding the basis for cellular growth, proliferation, and function requires determining
the roles of essential genes in diverse cellular processes, including visualizing their …

Scalable functional assays for the interpretation of human genetic variation

D Tabet, V Parikh, P Mali, FP Roth… - Annual Review of …, 2022 - annualreviews.org
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …

Mislocalization of pathogenic RBM20 variants in dilated cardiomyopathy is caused by loss-of-interaction with Transportin-3

J Kornienko, M Rodríguez-Martínez, K Fenzl… - Nature …, 2023 - nature.com
Severe forms of dilated cardiomyopathy (DCM) are associated with point mutations in the
alternative splicing regulator RBM20 that are frequently located in the arginine/serine-rich …

CRISPRthripsis: The risk of CRISPR/Cas9-induced chromothripsis in gene therapy

M Amendola, M Brusson, A Miccio - Stem Cells Translational …, 2022 - academic.oup.com
Abstract The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9
nuclease system has allowed the generation of disease models and the development of …

NF-κB dynamics in the language of immune cells

M Aqdas, MH Sung - Trends in immunology, 2023 - cell.com
Biological discovery has been driven by advances in throughput and resolution of analysis
technologies. They have also created an indelible bias for snapshot-based knowledge …

Pooled Genome-Scale CRISPR Screens in Single Cells

D Schraivogel, LM Steinmetz… - Annual Review of …, 2023 - annualreviews.org
Assigning functions to genes and learning how to control their expression are part of the
foundation of cell biology and therapeutic development. An efficient and unbiased method to …