Ensemble docking corresponds to the generation of an" ensemble" of drug target
conformations in computational structure-based drug discovery, often obtained by using …

Many essential biological processes including cell regulation and signalling are mediated
through the assembly of protein complexes. Changes to protein-protein interaction (PPI) …

Abstract SWISS-MODEL Repository (SMR) is a database of annotated 3D protein structure
models generated by the automated SWISS-MODEL homology modeling pipeline. It …

The inapplicability of amino acid covariation methods to small protein families has limited
their use for structural annotation of whole genomes. Recently, deep learning has shown …

Here, we present a major update to the SUPERFAMILY database and the webserver. We
describe the addition of new SUPERFAMILY 2.0 profile HMM library containing a total of 27 …

As one of the most important fundamental problems in protein sequence analysis, protein
remote homology detection is critical for both theoretical research (protein structure and …

RNA-dependent RNA polymerases play essential roles in RNA-mediated gene silencing in
eukaryotes. In Arabidopsis, RNA-DEPENDENT RNA POLYMERASE 2 (RDR2) physically …

Helios, a member of the Ikaros family of transcription factors, is predominantly expressed in
developing thymocytes, activated T cells, and regulatory T cells (Tregs). Studies in mice …

Small molecules play a critical role in modulating biological systems. Knowledge of
chemical–protein interactions helps address fundamental and practical questions in biology …

Computational modelling of proteins has been a major catalyst in structural biology.
Bioinformatics groups have exploited the repositories of known structures to predict high …