Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk

J Zhou, CY Park, CL Theesfeld, AK Wong, Y Yuan… - Nature …, 2019 - nature.com
We address the challenge of detecting the contribution of noncoding mutations to disease
with a deep-learning-based framework that predicts the specific regulatory effects and the …

Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes

P Feliciano, X Zhou, I Astrovskaya, TN Turner… - NPJ genomic …, 2019 - nature.com
Autism spectrum disorder (ASD) is a genetically heterogeneous condition, caused by a
combination of rare de novo and inherited variants as well as common variants in at least …

Genome sequencing of autism-affected families reveals disruption of putative noncoding regulatory DNA

TN Turner, F Hormozdiari, MH Duyzend… - The American Journal of …, 2016 - cell.com
We performed whole-genome sequencing (WGS) of 208 genomes from 53 families affected
by simplex autism. For the majority of these families, no copy-number variant (CNV) or …

Identification of de novo germline mutations and causal genes for sporadic diseases using trio‐based whole‐exome/genome sequencing

ZB Jin, Z Li, Z Liu, Y Jiang, XB Cai, J Wu - Biological Reviews, 2018 - Wiley Online Library
Whole‐genome or whole‐exome sequencing (WGS/WES) of the affected proband together
with normal parents (trio) is commonly adopted to identify de novo germline mutations …

McTwo: a two-step feature selection algorithm based on maximal information coefficient

R Ge, M Zhou, Y Luo, Q Meng, G Mai, D Ma, G Wang… - BMC …, 2016 - Springer
Background High-throughput bio-OMIC technologies are producing high-dimension data
from bio-samples at an ever increasing rate, whereas the training sample number in a …

Deep learning models for health and safety risk prediction in power infrastructure projects

A Ajayi, L Oyedele, H Owolabi, O Akinade… - Risk …, 2020 - Wiley Online Library
Inappropriate management of health and safety (H&S) risk in power infrastructure projects
can result in occupational accidents and equipment damage. Accidents at work have …

Deep exome sequencing identifies enrichment of deleterious mosaic variants in neurodevelopmental disorder genes and mitochondrial tRNA regions in bipolar …

M Nishioka, J Takayama, N Sakai, A Kazuno… - Molecular …, 2023 - nature.com
Bipolar disorder (BD) is a global medical issue, afflicting around 1% of the population with
manic and depressive episodes. Despite various genetic studies, the genetic architecture …

A Bayesian framework for de novo mutation calling in parents-offspring trios

Q Wei, X Zhan, X Zhong, Y Liu, Y Han, W Chen… - …, 2015 - academic.oup.com
Motivation: Spontaneous (de novo) mutations play an important role in the disease etiology
of a range of complex diseases. Identifying de novo mutations (DNMs) in sporadic cases …

De novo truncating variants in the last exon of SEMA6B cause progressive myoclonic epilepsy

K Hamanaka, E Imagawa, E Koshimizu… - The American Journal of …, 2020 - cell.com
De novo variants (DNVs) cause many genetic diseases. When DNVs are examined in the
whole coding regions of genes in next-generation sequencing analyses, pathogenic DNVs …

Maximal information coefficient-based two-stage feature selection method for railway condition monitoring

T Wen, D Dong, Q Chen, L Chen… - IEEE Transactions on …, 2019 - ieeexplore.ieee.org
In railway condition monitoring, feature classification is a very critical step, and the extracted
features are used to classify the types and levels of the faults. To achieve better accuracy …