Innate immune responses to trauma

M Huber-Lang, JD Lambris, PA Ward - Nature immunology, 2018 - nature.com
Trauma can affect any individual at any location and at any time over a lifespan. The
disruption of macrobarriers and microbarriers induces instant activation of innate immunity …

Topological data analysis in medical imaging: current state of the art

Y Singh, CM Farrelly, QA Hathaway, T Leiner… - Insights into …, 2023 - Springer
Abstract Machine learning, and especially deep learning, is rapidly gaining acceptance and
clinical usage in a wide range of image analysis applications and is regarded as providing …

Topology of deep neural networks

G Naitzat, A Zhitnikov, LH Lim - Journal of Machine Learning Research, 2020 - jmlr.org
We study how the topology of a data set M= Ma∪ Mb⊆ ℝ d, representing two classes a and
b in a binary classification problem, changes as it passes through the layers of a well-trained …

A user's guide to topological data analysis

E Munch - Journal of Learning Analytics, 2017 - learning-analytics.info
Topological data analysis (TDA) is a collection of powerful tools that can quantify shape and
structure in data in order to answer questions from the data's domain. This is done by …

Analysis of big data in gait biomechanics: Current trends and future directions

A Phinyomark, G Petri, E Ibáñez-Marcelo… - Journal of medical and …, 2018 - Springer
The increasing amount of data in biomechanics research has greatly increased the
importance of developing advanced multivariate analysis and machine learning techniques …

Omics-based strategies in precision medicine: toward a paradigm shift in inborn errors of metabolism investigations

A Tebani, C Afonso, S Marret, S Bekri - International journal of molecular …, 2016 - mdpi.com
The rise of technologies that simultaneously measure thousands of data points represents
the heart of systems biology. These technologies have had a huge impact on the discovery …

A metabolic function of FGFR3-TACC3 gene fusions in cancer

V Frattini, SM Pagnotta, Tala, JJ Fan, MV Russo… - Nature, 2018 - nature.com
Chromosomal translocations that generate in-frame oncogenic gene fusions are notable
examples of the success of targeted cancer therapies,,. We have previously described gene …

Visualization of exhaled breath metabolites reveals distinct diagnostic signatures for acute cardiorespiratory breathlessness

W Ibrahim, MJ Wilde, RL Cordell… - Science translational …, 2022 - science.org
Acute cardiorespiratory breathlessness accounts for one in eight of all emergency
hospitalizations. Early, noninvasive diagnostic testing is a clinical priority that allows rapid …

A severe asthma disease signature from gene expression profiling of peripheral blood from U-BIOPRED cohorts

J Bigler, M Boedigheimer, JPR Schofield… - American journal of …, 2017 - atsjournals.org
Rationale: Stratification of asthma at the molecular level, especially using accessible
biospecimens, could greatly enable patient selection for targeted therapy. Objectives: To …

Topological data analysis reveals genotype–phenotype relationships in primary ciliary dyskinesia

A Shoemark, B Rubbo, M Legendre… - European …, 2021 - Eur Respiratory Soc
Background Primary ciliary dyskinesia (PCD) is a heterogeneous inherited disorder caused
by mutations in approximately 50 cilia-related genes. PCD genotype–phenotype …