The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

LK Pino, BC Searle, JG Bollinger… - Mass spectrometry …, 2020 - Wiley Online Library
Skyline is a freely available, open‐source Windows client application for accelerating
targeted proteomics experimentation, with an emphasis on the proteomics and mass …

One‐carbon metabolism and epigenetics: understanding the specificity

SJ Mentch, JW Locasale - Annals of the New York Academy of …, 2016 - Wiley Online Library
One‐carbon metabolism is a metabolic network that integrates nutrient status from the
environment to yield multiple biological functions. The folate and methionine cycles …

Skyline for small molecules: a unifying software package for quantitative metabolomics

KJ Adams, B Pratt, N Bose, LG Dubois… - Journal of proteome …, 2020 - ACS Publications
Vendor-independent software tools for quantification of small molecules and metabolites are
lacking, especially for targeted analysis workflows. Skyline is a freely available, open-source …

A TAZ–ANGPTL4–NOX2 Axis regulates ferroptotic cell death and chemoresistance in epithelial ovarian cancer

WH Yang, Z Huang, J Wu, CKC Ding, SK Murphy… - Molecular Cancer …, 2020 - AACR
Ovarian cancer is the deadliest gynecologic cancer. Despite recent advances, clinical
outcomes remain poor, necessitating novel therapeutic approaches. To investigate …

Kinome screen of ferroptosis reveals a novel role of ATM in regulating iron metabolism

PH Chen, J Wu, CKC Ding, CC Lin, S Pan… - Cell Death & …, 2020 - nature.com
Ferroptosis is a specialized iron-dependent cell death that is associated with lethal lipid
peroxidation. Modulation of ferroptosis may have therapeutic potential since it has been …

MESH1 is a cytosolic NADPH phosphatase that regulates ferroptosis

CKC Ding, J Rose, T Sun, J Wu, PH Chen, CC Lin… - Nature …, 2020 - nature.com
Critical to the bacterial stringent response is the rapid relocation of resources from
proliferation toward stress survival through the respective accumulation and degradation of …

Ferroptosis: An emerging approach for targeting cancer stem cells and drug resistance

SM Elgendy, SK Alyammahi, DW Alhamad… - Critical Reviews in …, 2020 - Elsevier
Resistance to chemotherapeutic agents remains a major challenge in the fierce battle
against cancer. Cancer stem cells (CSCs) are a small population of cells in tumors that …

Zinc transporter ZIP7 is a novel determinant of ferroptosis

PH Chen, J Wu, Y Xu, CKC Ding, AA Mestre… - Cell death & …, 2021 - nature.com
Ferroptosis is a newly described form of regulated cell death triggered by oxidative stresses
and characterized by extensive lipid peroxidation and membrane damages. The name of …

[HTML][HTML] Novel insights into ferroptosis: Implications for age-related diseases

RP Zhou, Y Chen, X Wei, B Yu, ZG Xiong, C Lu… - Theranostics, 2020 - ncbi.nlm.nih.gov
Rapid increase in aging populations is an urgent problem because older adults are more
likely to suffer from disabilities and age-related diseases (ARDs), burdening healthcare …

Epigenetic switch–induced viral mimicry evasion in chemotherapy-resistant breast cancer

G Deblois, SAM Tonekaboni, G Grillo, C Martinez… - Cancer discovery, 2020 - AACR
Tumor progression upon treatment arises from preexisting resistant cancer cells and/or
adaptation of persister cancer cells committing to an expansion phase. Here, we show that …