Applications and advances of metabolite biosensors for metabolic engineering

D Liu, T Evans, F Zhang - Metabolic engineering, 2015 - Elsevier
Quantification and regulation of pathway metabolites is crucial for optimization of microbial
production bioprocesses. Genetically encoded biosensors provide the means to couple …

Controlling allosteric networks in proteins

NV Dokholyan - Chemical reviews, 2016 - ACS Publications
Allosteric transition, defined as conformational changes induced by ligand binding, is one of
the fundamental properties of proteins. Allostery has been observed and characterized in …

Development of epistatic YES and AND protein logic gates and their assembly into signalling cascades

Z Guo, O Smutok, CE Ayva, P Walden, J Parker… - Nature …, 2023 - nature.com
The construction and assembly of artificial allosteric protein switches into information and
energy processing networks connected to both biological and non-biological systems is a …

The classification and evolution of enzyme function

SM Cuesta, SA Rahman, N Furnham, JM Thornton - Biophysical journal, 2015 - cell.com
Enzymes are the proteins responsible for the catalysis of life. Enzymes sharing a common
ancestor as defined by sequence and structure similarity are grouped into families and …

Switchable hydrolase based on reversible formation of supramolecular catalytic site using a self‐assembling peptide

C Zhang, R Shafi, A Lampel… - Angewandte Chemie …, 2017 - Wiley Online Library
The reversible regulation of catalytic activity is a feature found in natural enzymes which is
not commonly observed in artificial catalytic systems. Here, we fabricate an artificial …

The physics and physical chemistry of molecular machines

RD Astumian, S Mukherjee, A Warshel - ChemPhysChem, 2016 - Wiley Online Library
The concept of a “power stroke”—a free‐energy releasing conformational change—appears
in almost every textbook that deals with the molecular details of muscle, the flagellar rotor …

Photoreceptor engineering

T Ziegler, A Möglich - Frontiers in molecular biosciences, 2015 - frontiersin.org
Sensory photoreceptors not only control diverse adaptive responses in Nature, but as light-
regulated actuators they also provide the foundation for optogenetics, the non-invasive and …

[HTML][HTML] Structure-based prediction of protein allostery

JG Greener, MJE Sternberg - Current Opinion in Structural Biology, 2018 - Elsevier
Allostery is the functional change at one site on a protein caused by a change at a distant
site. In order for the benefits of allostery to be taken advantage of, both for basic …

Generalizable protein biosensors based on synthetic switch modules

Z Guo, WA Johnston, J Whitfield… - Journal of the …, 2019 - ACS Publications
Allosteric protein switches are key controllers of information and energy processing in living
organisms and are desirable engineered control tools in synthetic systems. Here we present …

Switchable aqueous catalytic systems for organic transformations

N Das, C Maity - Communications Chemistry, 2022 - nature.com
In living organisms, enzyme catalysis takes place in aqueous media with extraordinary
spatiotemporal control and precision. The mechanistic knowledge of enzyme catalysis and …