Revisiting classic clines in Drosophila melanogaster in the age of genomics

JR Adrion, MW Hahn, BS Cooper - Trends in Genetics, 2015 - cell.com
Adaptation to spatially varying environments has been studied for decades, but advances in
sequencing technology are now enabling researchers to investigate the landscape of …

Experimental Evolution in a Warming World: The Omics Era

MA Santos, A Carromeu-Santos… - Molecular Biology …, 2024 - academic.oup.com
A comprehensive understanding of the genetic mechanisms that shape species responses
to thermal variation is essential for more accurate predictions of the impacts of climate …

A benchmark of gene expression tissue-specificity metrics

N Kryuchkova-Mostacci… - Briefings in …, 2017 - academic.oup.com
One of the major properties of genes is their expression pattern. Notably, genes are often
classified as tissue specific or housekeeping. This property is of interest to molecular …

Genomic Evidence for Adaptive Inversion Clines in Drosophila melanogaster

M Kapun, DK Fabian, J Goudet… - Molecular biology and …, 2016 - academic.oup.com
Clines in chromosomal inversion polymorphisms—presumably driven by climatic gradients—
are common but there is surprisingly little evidence for selection acting on them. Here we …

Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish

A Jacobs, M Carruthers, A Yurchenko… - PLoS …, 2020 - journals.plos.org
Understanding the extent to which ecological divergence is repeatable is essential for
predicting responses of biodiversity to environmental change. Here we test the predictability …

[PDF][PDF] An ancestral balanced inversion polymorphism confers global adaptation

M Kapun, ED Mitchell, TJ Kawecki… - … Biology and Evolution, 2023 - academic.oup.com
Since the pioneering work of Dobzhansky in the 1930s and 1940s, many chromosomal
inversions have been identified, but how they contribute to adaptation remains poorly …

The genomics of sexual conflict

L Rowe, SF Chenoweth… - The American …, 2018 - journals.uchicago.edu
Sexual dimorphism is a substantial contributor to the diversity observed in nature, extending
from elaborate traits to the expression level of individual genes. Sexual conflict and sexually …

TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes

E Lerat, M Fablet, L Modolo… - Nucleic acids …, 2017 - academic.oup.com
Over recent decades, substantial efforts have been made to understand the interactions
between host genomes and transposable elements (TEs). The impact of TEs on the …

Genotype by environment interaction for gene expression in Drosophila melanogaster

W Huang, MA Carbone, RF Lyman, RRH Anholt… - Nature …, 2020 - nature.com
The genetics of phenotypic responses to changing environments remains elusive. Using
whole-genome quantitative gene expression as a model, here we study how the genetic …

Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster

HE Machado, AO Bergland, KR O'Brien… - Molecular …, 2016 - Wiley Online Library
Examples of clinal variation in phenotypes and genotypes across latitudinal transects have
served as important models for understanding how spatially varying selection and …