Action mechanisms and research methods of tRNA-derived small RNAs

Y Xie, L Yao, X Yu, Y Ruan, Z Li, J Guo - Signal transduction and …, 2020 - nature.com
Abstract tRNA-derived small RNAs (tsRNAs), including tRNA-derived fragments (tRFs) and
tRNA halves (tiRNAs), are small regulatory RNAs processed from mature tRNAs or …

[HTML][HTML] Translating RNA sequencing into clinical diagnostics: opportunities and challenges

SA Byron, KR Van Keuren-Jensen… - Nature Reviews …, 2016 - nature.com
With the emergence of RNA sequencing (RNA-seq) technologies, RNA-based biomolecules
hold expanded promise for their diagnostic, prognostic and therapeutic applicability in …

Pseudouridine-modified tRNA fragments repress aberrant protein synthesis and predict leukaemic progression in myelodysplastic syndrome

N Guzzi, S Muthukumar, M Cieśla, G Todisco… - Nature Cell …, 2022 - nature.com
Transfer RNA-derived fragments (tRFs) are emerging small noncoding RNAs that, although
commonly altered in cancer, have poorly defined roles in tumorigenesis. Here we show that …

On the expanding roles of tRNA fragments in modulating cell behavior

R Magee, I Rigoutsos - Nucleic acids research, 2020 - academic.oup.com
The fragments that derive from transfer RNAs (tRNAs) are an emerging category of
regulatory RNAs. Known as tRFs, these fragments were reported for the first time only a …

Emerging functions for snoRNAs and snoRNA-derived fragments

M Wajahat, CP Bracken, A Orang - International journal of molecular …, 2021 - mdpi.com
The widespread implementation of mass sequencing has revealed a diverse landscape of
small RNAs derived from larger precursors. Whilst many of these are likely to be byproducts …

tRNA-derived fragments and tRNA halves: the new players in cancers

L Zhu, J Ge, T Li, Y Shen, J Guo - Cancer Letters, 2019 - Elsevier
Abstract tRNA-derived fragments (tRFs) and tRNA halves (tiRNAs) are small non-coding
RNAs derived from precursor tRNAs or mature tRNAs. Depending on the sources, tRFs can …

Roles of tRNA-derived fragments in human cancers

C Sun, Z Fu, S Wang, J Li, Y Li, Y Zhang, F Yang, J Chu… - Cancer letters, 2018 - Elsevier
Transfer RNAs (tRNAs) were traditionally considered to participate in protein translation.
Recent studies have identified a novel class of small non-coding RNAs (sncRNAs) …

MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data

P Loher, AG Telonis, I Rigoutsos - Scientific reports, 2017 - nature.com
Transfer RNA fragments (tRFs) are an established class of constitutive regulatory molecules
that arise from precursor and mature tRNAs. RNA deep sequencing (RNA-seq) has greatly …

The potential of circulating cell-free RNA as a cancer biomarker: challenges and opportunities

IA Zaporozhchenko, AA Ponomaryova… - Expert review of …, 2018 - Taylor & Francis
Introduction: Cancer statistics show that recent improvements in cancer management are
only mildly effective in the absence of reliable biomarkers for the detection, diagnosis and …

Multi-perspective quality control of Illumina RNA sequencing data analysis

Q Sheng, K Vickers, S Zhao, J Wang… - Briefings in …, 2017 - academic.oup.com
Quality control (QC) is a critical step in RNA sequencing (RNA-seq). Yet, it is often ignored or
conducted on a limited basis. Here, we present a multi-perspective strategy for QC of RNA …