Multi-omic and multi-view clustering algorithms: review and cancer benchmark

N Rappoport, R Shamir - Nucleic acids research, 2018 - academic.oup.com
Recent high throughput experimental methods have been used to collect large biomedical
omics datasets. Clustering of single omic datasets has proven invaluable for biological and …

Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

[图书][B] Habitat suitability and distribution models: with applications in R

A Guisan, W Thuiller, NE Zimmermann - 2017 - books.google.com
This book introduces the key stages of niche-based habitat suitability model building,
evaluation and prediction required for understanding and predicting future patterns of …

Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

D Pont, M Rocle, A Valentini, R Civade, P Jean… - Scientific reports, 2018 - nature.com
Despite the ecological and societal importance of large rivers, fish sampling remains costly
and limited to specific habitats (eg, river banks). Using an eDNA metabarcoding approach …

[HTML][HTML] Identification of an intestinal microbiota signature associated with severity of irritable bowel syndrome

J Tap, M Derrien, H Törnblom, R Brazeilles… - Gastroenterology, 2017 - Elsevier
Background & Aims We have limited knowledge about the association between the
composition of the intestinal microbiota and clinical features of irritable bowel syndrome …

A global method for calculating plant CSR ecological strategies applied across biomes world‐wide

S Pierce, D Negreiros, BEL Cerabolini… - Functional …, 2017 - Wiley Online Library
Summary Competitor, stress‐tolerator, ruderal (CSR) theory is a prominent plant functional
strategy scheme previously applied to local floras. Globally, the wide geographic and …

Application of multivariate statistical techniques in microbial ecology

O Paliy, V Shankar - Molecular ecology, 2016 - Wiley Online Library
Recent advances in high‐throughput methods of molecular analyses have led to an
explosion of studies generating large‐scale ecological data sets. In particular, noticeable …

Dimension reduction techniques for the integrative analysis of multi-omics data

C Meng, OA Zeleznik, GG Thallinger… - Briefings in …, 2016 - academic.oup.com
State-of-the-art next-generation sequencing, transcriptomics, proteomics and other high-
throughput 'omics' technologies enable the efficient generation of large experimental data …

Ecological niches and geographic distributions (MPB-49)

AT Peterson, J Soberón, RG Pearson… - Ecological niches and …, 2011 - degruyter.com
This book provides a first synthetic view of an emerging area of ecology and biogeography,
linking individual-and population-level processes to geographic distributions and …

[图书][B] Numerical ecology with R

D Borcard, F Gillet, P Legendre - 2011 - Springer
Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical
Ecology and the implementation of this discipline in the R language. After short theoretical …