Programmable design of isothermal nucleic acid diagnostic assays through abstraction-based models

G Xu, J Reboud, Y Guo, H Yang, H Gu, C Fan… - Nature …, 2022 - nature.com
Accelerating the design of nucleic acid amplification methods remains a critical challenge in
the development of molecular tools to identify biomarkers to diagnose both infectious and …

Conserved 3′ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

D Grechishnikova, M Poptsova - BMC genomics, 2016 - Springer
Background In the process of retrotransposition LINEs use their own machinery for copying
and inserting themselves into new genomic locations, while SINEs are parasitic and require …

Effect of Internal and Bulge Loops on the Thermal Stability of Small DNA Duplexes

E Stellwagen, PJ Barnard… - The Journal of Physical …, 2024 - ACS Publications
The thermal stabilities of DNA duplexes analogous to the let-7 microRNA: lin-41 mRNA
complex from Caenorhabditis elegans have been measured by free solution capillary …

Strategies for Moving Multi-Target Nucleic Acid Assays Towards Clinical Use

HN Kozlowski - 2022 - search.proquest.com
Diagnostic tests have the power to detect disease and determine treatments. Recent
diagnostic innovations have focused on technological advancements to decrease …

Single-molecule topochemical analyses for large-scale multiplexing tasks

S Mandal, X Zhang, S Pandey, H Mao - Analytical chemistry, 2019 - ACS Publications
Multitasking is the pivotal feature in next-generation chemo-or bioanalyses. However,
simultaneous analyses rarely exceed over three different tasks, which is ascribed to the …

The Impact of Patient Characteristics on Diagnostic Test Performance

HN Kozlowski, S Sindhwani, WCW Chan - Small Methods, 2022 - Wiley Online Library
Diagnostic tests can detect diseases, monitor responses, and inform treatments. They are
vital to the effective management of disease. There have been significant advances in the …

Differential effects of strand asymmetry on the energetics and structural flexibility of DNA internal loops

T Tran, B Cannon - Biochemistry, 2017 - ACS Publications
Internal loops within structured nucleic acids disrupt local base stacking and destabilize
neighboring helical domains; however, these structural motifs also expand the …

A brief note on the potential of homo-oligo-dsDNA and hetero-oligo-dsDNA based on their binder-free electrochemical characteristics on gold electrode

S Afreen, S Huang, JJ Zhu - Analytica Chimica Acta, 2021 - Elsevier
In this fundamental research, we found that homo-oligo based dsDNA holds potential
electrochemical characteristics in comparison to hetero-oligo based dsDNA which can be …

Solution-Phase Studies of Fast Conformational Dynamics at the Single-Molecule Level

B Cullinane - 2024 - search.proquest.com
This thesis details the implementation of various fluorescence techniques in combination
with an anti-Brownian electrokinetic (ABEL) trap to examine the conformations and …

Transfert d'énergie intermoléculaire par résonance à partir d'un donneur éteint (DRET): applications à la détection fluorogénique des acides nucléiques et leur …

G Barnoin - 2021 - theses.hal.science
Les récentes découvertes de l'implication des acides nucléiques dans un large éventail de
processus biologiques ont révélé l'importance de pouvoir les détecter et les localiser …