Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study

AI Klimenko, YG Matushkin, NA Kolchanov… - BMC microbiology, 2016 - Springer
Background Bacteriophages are known to be one of the driving forces of bacterial evolution.
Besides promoting horizontal transfer of genes between cells, they may induce directional …

Finding, and Countering, Future Resistance using Bacterial Antibiotic Adversarial Genetic Algorithm (BAAGA)

C Kromer-Edwards, S Oliveira - 2023 International Joint …, 2023 - ieeexplore.ieee.org
Since the beginning of antimicrobial therapy, antimicrobial resistance from bacteria has
been a threat. Now, multiple companies track antibiotic resistance annually. Monitoring …

Leave or stay: Simulating motility and fitness of microorganisms in dynamic aquatic ecosystems

A Klimenko, Y Matushkin, N Kolchanov, S Lashin - Biology, 2021 - mdpi.com
Simple Summary Motile bacteria are widespread in various water ecosystems along with
nonmotile species, which posits the question: what makes motility an advantage in such …

La evolución de los sistemas bioquímicos complejos

JG Zúñiga - Revista de Filosofía de la Universidad de Costa Rica, 2018 - revistas.ucr.ac.cr
La evolución de los sistemas bioquímicos complejos plantea un desafío científico y filosófico
de gran importancia. La teoría darwiniana es una posible solución, pero, tomando en …

Spatial heterogeneity promotes antagonistic evolutionary scenarios in microbial community explained by ecological stratification: a simulation study

AI Klimenko, YG Matushkin, NA Kolchanov… - Ecological modelling, 2019 - Elsevier
There are two evolutionary trends in genome organization among microbes: towards either
amplification or reduction. Which evolutionary scenario overcomes depends on …

A review of simulation and modeling approaches in microbiology

AI Klimenko, ZS Mustafin, AD Chekantsev… - Russian Journal of …, 2016 - Springer
Bacterial communities are closely interrelated systems consisting of numerous species
making it challenging to analyze their structure and relations. At present, there are several …

Современные подходы к математическому и компьютерному моделированию в микробиологии

АИ Клименко, ЗС Мустафин… - … журнал генетики и …, 2016 - vavilov.elpub.ru
Аннотация Бактериальные сообщества являются тесно взаимосвязанными системами,
состоящими из большого числа видов, что значительно осложняет анализ их …

Predicting Antibiotic Resistance Using Machine Learning

C Kromer-Edwards - 2023 - search.proquest.com
Bacteria gain resistance mechanisms to antimicrobial agents over time. These resistance
mechanisms lead to increasing Antimicrobial Resistance (AMR). Increasing AMR leads to …

Toward agent-based models for pre-harvest food safety

PW Bergholz, M Wiedmann - IBM Journal of Research and …, 2016 - ieeexplore.ieee.org
The safety of fresh produce is a concern because many types of produce are consumed raw,
and the incidence of produce-borne diseases appears to be increasing. Good agricultural …

[PDF][PDF] NUMERIC MODELING OF BACTERIA POPULATION EVOLUTION IN HUMAN LUNGS

NE Pil, VM Chigvintsev - Health Risk Analysis, 2021 - journal.fcrisk.ru
The work dwells on certain results that characterize how concentrations of immune system
components and bacteria population are spatially distributed when an immune response is …