The critical role of RNA processing and degradation in the control of gene expression

CM Arraiano, JM Andrade, S Domingues… - FEMS microbiology …, 2010 - academic.oup.com
The continuous degradation and synthesis of prokaryotic mRNAs not only give rise to the
metabolic changes that are required as cells grow and divide but also rapid adaptation to …

The exosome: a multipurpose RNA-decay machine

M Schmid, TH Jensen - Trends in biochemical sciences, 2008 - cell.com
The diversity of RNAs in the cell continues to amaze. In addition to the 'classic'species of
mRNA, tRNA, rRNA, snRNA and snoRNA, it is now clear that the majority of genomic …

Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical …

PDB Olinares, L Ponnala, KJ van Wijk - Molecular & Cellular Proteomics, 2010 - ASBMB
To characterize MDa-sized macromolecular chloroplast stroma protein assemblies and to
extend coverage of the chloroplast stroma proteome, we fractionated soluble chloroplast …

[HTML][HTML] The Clp protease system; a central component of the chloroplast protease network

PDB Olinares, J Kim, KJ van Wijk - Biochimica Et Biophysica Acta (BBA) …, 2011 - Elsevier
Intra-plastid proteases play crucial and diverse roles in the development and maintenance
of non-photosynthetic plastids and chloroplasts. Formation and maintenance of a functional …

Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism

B Zybailov, G Friso, J Kim, A Rudella… - Molecular & Cellular …, 2009 - ASBMB
The clpr2-1 mutant is delayed in development due to reduction of the chloroplast ClpPR
protease complex. To understand the role of Clp proteases in plastid biogenesis and …

The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq

JM Andrade, V Pobre, AM Matos, CM Arraiano - Rna, 2012 - rnajournal.cshlp.org
The transient existence of small RNAs free of binding to the RNA chaperone Hfq is part of
the normal dynamic lifecycle of a sRNA. Small RNAs are extremely labile when not …

Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli

V Pobre, CM Arraiano - BMC genomics, 2015 - Springer
Background The RNA steady-state levels in the cell are a balance between synthesis and
degradation rates. Although transcription is important, RNA processing and turnover are …

The RNA exosome and proteasome: common principles of degradation control

DL Makino, F Halbach, E Conti - Nature reviews Molecular cell biology, 2013 - nature.com
Defective RNAs and proteins are swiftly degraded by cellular quality control mechanisms. A
large fraction of their degradation is mediated by the exosome and the proteasome. These …

The role of 3′–5′ exoribonucleases in RNA degradation

JM Andrade, V Pobre, IJ Silva, S Domingues… - Progress in molecular …, 2009 - Elsevier
RNA degradation is a major process controlling RNA levels and plays a central role in cell
metabolism. From the labile messenger RNA to the more stable noncoding RNAs (mostly …

Bacterial/archaeal/organellar polyadenylation

BK Mohanty, SR Kushner - Wiley Interdisciplinary Reviews …, 2011 - Wiley Online Library
Although the first poly (A) polymerase (PAP) was discovered in Escherichia coli in 1962, the
study of polyadenylation in bacteria was largely ignored for the next 30 years. However, with …