Towards operando computational modeling in heterogeneous catalysis

L Grajciar, CJ Heard, AA Bondarenko… - Chemical Society …, 2018 - pubs.rsc.org
An increased synergy between experimental and theoretical investigations in
heterogeneous catalysis has become apparent during the last decade. Experimental work …

[HTML][HTML] The role of metadata in reproducible computational research

J Leipzig, D Nüst, CT Hoyt, K Ram, J Greenberg - Patterns, 2021 - cell.com
Reproducible computational research (RCR) is the keystone of the scientific method for in
silico analyses, packaging the transformation of raw data to published results. In addition to …

A survey on provenance: What for? What form? What from?

M Herschel, R Diestelkämper, H Ben Lahmar - The VLDB Journal, 2017 - Springer
Provenance refers to any information describing the production process of an end product,
which can be anything from a piece of digital data to a physical object. While this survey …

Practical whole-system provenance capture

T Pasquier, X Han, M Goldstein, T Moyer… - Proceedings of the …, 2017 - dl.acm.org
Data provenance describes how data came to be in its present form. It includes data sources
and the transformations that have been applied to them. Data provenance has many uses …

YesWorkflow: a user-oriented, language-independent tool for recovering workflow information from scripts

T McPhillips, T Song, T Kolisnik, S Aulenbach… - arXiv preprint arXiv …, 2015 - arxiv.org
Scientific workflow management systems offer features for composing complex
computational pipelines from modular building blocks, for executing the resulting automated …

Ecological network metrics: opportunities for synthesis

MK Lau, SR Borrett, B Baiser, NJ Gotelli… - Ecosphere, 2017 - Wiley Online Library
Network ecology provides a systems basis for approaching ecological questions, such as
factors that influence biological diversity, the role of particular species or particular traits in …

A survey on collecting, managing, and analyzing provenance from scripts

JF Pimentel, J Freire, L Murta… - ACM Computing Surveys …, 2019 - dl.acm.org
Scripts are widely used to design and run scientific experiments. Scripting languages are
easy to learn and use, and they allow complex tasks to be specified and executed in fewer …

[HTML][HTML] Distributed workflows with Jupyter

I Colonnelli, M Aldinucci, B Cantalupo… - Future Generation …, 2022 - Elsevier
The designers of a new coordination interface enacting complex workflows have to tackle a
dichotomy: choosing a language-independent or language-dependent approach. Language …

Yin & Yang: demonstrating complementary provenance from noWorkflow & YesWorkflow

JF Pimentel, S Dey, T McPhillips, K Belhajjame… - … VA, USA, June 7-8, 2016 …, 2016 - Springer
The noWorkflow and YesWorkflow toolkits both enable researchers to capture, store, query,
and visualize the provenance of results produced by scripts that process scientific data …

[PDF][PDF] Provenance and the different flavors of computational reproducibility

J Freire, F Chirigati - IEEE Data Engineering Bulletin, 2018 - scholar.archive.org
While reproducibility has been a requirement in natural sciences for centuries,
computational experiments have not followed the same standard. Often, there is insufficient …