[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
Identifying biases and their potential solutions in human microbiome studies
Advances in DNA sequencing technology have vastly improved the ability of researchers to
explore the microbial inhabitants of the human body. Unfortunately, while these studies have …
explore the microbial inhabitants of the human body. Unfortunately, while these studies have …
Ancient and modern environmental DNA
MW Pedersen… - … of the Royal …, 2015 - royalsocietypublishing.org
DNA obtained from environmental samples such as sediments, ice or water (environmental
DNA, eDNA), represents an important source of information on past and present biodiversity …
DNA, eDNA), represents an important source of information on past and present biodiversity …
Evaluation of methods for the extraction and purification of DNA from the human microbiome
Background DNA extraction is an essential step in all cultivation-independent approaches to
characterize microbial diversity, including that associated with the human body. A …
characterize microbial diversity, including that associated with the human body. A …
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis
A Salonen, J Nikkilä, J Jalanka-Tuovinen… - Journal of …, 2010 - Elsevier
Several different protocols are used for fecal DNA extraction, which is an integral step in all
phylogenetic and metagenomic approaches to characterize the highly diverse intestinal …
phylogenetic and metagenomic approaches to characterize the highly diverse intestinal …
Long-term phosphorus fertilisation increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils
Fertilisers, especially nitrogen (N) and phosphorus (P) supplies, are frequently used in
agricultural soil management to attain high crop yields. However, the intensive application of …
agricultural soil management to attain high crop yields. However, the intensive application of …
Environmental DNA metabarcoding studies are critically affected by substrate selection
Effective biomonitoring is critical for driving management outcomes that ensure long‐term
sustainability of the marine environment. In recent years, environmental DNA (eDNA) …
sustainability of the marine environment. In recent years, environmental DNA (eDNA) …
How to get more out of molecular fingerprints: practical tools for microbial ecology
M Marzorati, L Wittebolle, N Boon… - Environmental …, 2008 - Wiley Online Library
Community‐level molecular techniques are widely used in comparative microbial ecology to
assess the diversity of microbial communities and their response to changing environments …
assess the diversity of microbial communities and their response to changing environments …
Accessing the soil metagenome for studies of microbial diversity
TO Delmont, P Robe, S Cecillon, IM Clark… - Applied and …, 2011 - Am Soc Microbiol
Soil microbial communities contain the highest level of prokaryotic diversity of any
environment, and metagenomic approaches involving the extraction of DNA from soil can …
environment, and metagenomic approaches involving the extraction of DNA from soil can …
Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences
B Wagner Mackenzie, DW Waite… - Frontiers in microbiology, 2015 - frontiersin.org
The human gut contains dense and diverse microbial communities which have profound
influences on human health. Gaining meaningful insights into these communities requires …
influences on human health. Gaining meaningful insights into these communities requires …