What, where, and how: regulation of translation and the translational landscape in plants

HYL Wu, J Jen, PY Hsu - The Plant Cell, 2024 - academic.oup.com
Translation is a crucial step in gene expression and plays a vital role in regulating various
aspects of plant development and environmental responses. It is a dynamic and complex …

Emerging personalized opportunities for enhancing translational readthrough in rare genetic diseases and beyond

RN Wagner, M Wießner, A Friedrich… - International journal of …, 2023 - mdpi.com
Nonsense mutations trigger premature translation termination and often give rise to
prevalent and rare genetic diseases. Consequently, the pharmacological suppression of an …

Improved super-resolution ribosome profiling reveals prevalent translation of upstream ORFs and small ORFs in Arabidopsis

HYL Wu, Q Ai, RT Teixeira, PHT Nguyen, G Song… - The Plant …, 2024 - academic.oup.com
A crucial step in functional genomics is identifying actively translated ORFs and linking them
to biological functions. The challenge lies in identifying short ORFs, as their identification is …

Proteolysis of host DEAD‐box RNA helicase by potyviral proteases activates plant immunity

Z Jia, P Rui, X Fang, K Han, T Yu, Y Lu… - New …, 2025 - Wiley Online Library
The precise mechanisms by which plant viral proteases interact with and cleave host
proteins, thereby participating in virus–host interactions, are not well understood …

Comparative genomics of macaques and integrated insights into genetic variation and population history

S Zhang, N Xu, L Fu, X Yang, Y Li, Z Yang, Y Feng… - BioRxiv, 2024 - biorxiv.org
The crab-eating macaques (Macaca fascicularis) and rhesus macaques (M. mulatta) are
widely studied nonhuman primates in biomedical and evolutionary research. Despite their …

Termination codon readthrough of NNAT mRNA regulates calcium-mediated neuronal differentiation

M Pandit, MN Akhtar, S Sundaram, S Sahoo… - Journal of Biological …, 2023 - ASBMB
Termination codon readthrough (TCR) is a process in which ribosomes continue to translate
an mRNA beyond a stop codon generating a C-terminally extended protein isoform. Here …

Hominini-specific regulation of the cell cycle by stop codon readthrough of FEM1B

MN Akhtar, A Singh, LE Manjunath… - Journal of Cell …, 2024 - journals.biologists.com
ABSTRACT FEM1B is a substrate-recognition component of the CRL2 E3 ubiquitin-protein
ligase. This multi-protein complex targets specific proteins for ubiquitylation, which leads to …

[HTML][HTML] Readthrough events in plants reveal plasticity of stop codons

Y Zhang, H Li, Y Shen, S Wang, L Tian, H Yin, J Shi… - Cell Reports, 2024 - cell.com
Stop codon readthrough (SCR) has important biological implications but remains largely
uncharacterized. Here, we identify 1,009 SCR events in plants using a proteogenomic …

Kinetics of Translating Ribosomes Determine the Efficiency of Programmed Stop Codon Readthrough

D Kar, D Manna, LE Manjunath, A Singh, S Som… - Journal of Molecular …, 2023 - Elsevier
During translation, a stop codon on the mRNA signals the ribosomes to terminate the
process. In certain mRNAs, the termination fails due to the recoding of the canonical stop …

Overlaps Between CDS Regions of Protein-Coding Genes in the Human Genome: A Case Study on the NR1D1-THRA Gene Pair

L Bukhnikashvili - Journal of Molecular Evolution, 2023 - Springer
For several decades, it has been known that a substantial number of genes within human
DNA exhibit overlap; however, the biological and evolutionary significance of these overlaps …