Metabolic regulation of the immune humoral response

M Boothby, RC Rickert - Immunity, 2017 - cell.com
Productive humoral responses require that naive B cells and their differentiated progeny
move among distinct micro-environments. In this review, we discuss how studies are …

The Bach family of transcription factors: a comprehensive review

Y Zhou, H Wu, M Zhao, C Chang, Q Lu - Clinical reviews in allergy & …, 2016 - Springer
The transcription factors Bach1 and Bach2, which belong to a basic region-leucine zipper
(bZip) family, repress target gene expression by forming heterodimers with small Maf …

Balance between immunoregulatory B cells and plasma cells drives pancreatic tumor immunity

B Mirlekar, Y Wang, S Li, M Zhou, S Entwistle… - Cell reports …, 2022 - cell.com
Plasma cell responses are associated with anti-tumor immunity and favorable response to
immunotherapy. B cells can amplify anti-tumor immune responses through antibody …

Gene regulatory network modeling of macrophage differentiation corroborates the continuum hypothesis of polarization states

A Palma, AS Jarrah, P Tieri, G Cesareni… - Frontiers in …, 2018 - frontiersin.org
Macrophages derived from monocyte precursors undergo specific polarization processes
which are influenced by the local tissue environment: classically activated (M1) …

Gene regulatory networks exhibit several kinds of memory: Quantification of memory in biological and random transcriptional networks

S Biswas, S Manicka, E Hoel, M Levin - Iscience, 2021 - cell.com
Gene regulatory networks (GRNs) process important information in developmental biology
and biomedicine. A key knowledge gap concerns how their responses change over time …

A regulatory circuit controlling the dynamics of NFκB cRel transitions B cells from proliferation to plasma cell differentiation

K Roy, S Mitchell, Y Liu, S Ohta, Y Lin, MO Metzig… - Immunity, 2019 - cell.com
Humoral immunity depends on efficient activation of B cells and their subsequent
differentiation into antibody-secreting cells (ASCs). The transcription factor NFκB cRel is …

The developmental-genetics of canalization

B Hallgrimsson, RM Green, DC Katz, JL Fish… - Seminars in cell & …, 2019 - Elsevier
Canalization, or robustness to genetic or environmental perturbations, is fundamental to
complex organisms. While there is strong evidence for canalization as an evolved property …

Boolean network modeling in systems pharmacology

P Bloomingdale, VA Nguyen, J Niu… - … of pharmacokinetics and …, 2018 - Springer
Quantitative systems pharmacology (QSP) is an emerging discipline that aims to discover
how drugs modulate the dynamics of biological components in molecular and cellular …

Termination of CD40L co‐stimulation promotes human B cell differentiation into antibody‐secreting cells

C Marsman, NJM Verstegen, M Streutker… - European journal of …, 2022 - Wiley Online Library
Human naïve B cells are notoriously difficult to differentiate into antibody‐secreting cells
(ASCs) in vitro while maintaining sufficient cell numbers to evaluate the differentiation …

[HTML][HTML] Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells

JD Schwab, N Ikonomi, SD Werle, FM Weidner… - Computational and …, 2021 - Elsevier
Regulatory dependencies in molecular networks are the basis of dynamic behaviors
affecting the phenotypical landscape. With the advance of high throughput technologies, the …