Multiscale simulations of biological membranes: the challenge to understand biological phenomena in a living substance

G Enkavi, M Javanainen, W Kulig, T Róg… - Chemical …, 2019 - ACS Publications
Biological membranes are tricky to investigate. They are complex in terms of molecular
composition and structure, functional over a wide range of time scales, and characterized by …

Vitamin A signaling and homeostasis in obesity, diabetes, and metabolic disorders

WS Blaner - Pharmacology & therapeutics, 2019 - Elsevier
Much evidence has accumulated in the literature over the last fifteen years that indicates
vitamin A has a role in metabolic disease prevention and causation. This literature proposes …

Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction

A Punjani, H Zhang, DJ Fleet - Nature methods, 2020 - nature.com
Cryogenic electron microscopy (cryo-EM) is widely used to study biological macromolecules
that comprise regions with disorder, flexibility or partial occupancy. For example, membrane …

[PDF][PDF] Real-space refinement in PHENIX for cryo-EM and crystallography

PV Afonine, BK Poon, RJ Read… - … Section D: Structural …, 2018 - journals.iucr.org
This article describes the implementation of real-space refinement in the phenix.
real_space_refine program from the PHENIX suite. The use of a simplified refinement target …

Biological functions of RBP4 and its relevance for human diseases

JS Steinhoff, A Lass, M Schupp - Frontiers in Physiology, 2021 - frontiersin.org
Retinol binding protein 4 (RBP4) is a member of the lipocalin family and the major transport
protein of the hydrophobic molecule retinol, also known as vitamin A, in the circulation …

Membranes under the magnetic lens: a dive into the diverse world of membrane protein structures using Cryo-EM

SJ Piper, RM Johnson, D Wootten, PM Sexton - Chemical reviews, 2022 - ACS Publications
Membrane proteins are highly diverse in both structure and function and can, therefore,
present different challenges for structure determination. They are biologically important for …

Addressing preferred specimen orientation in single-particle cryo-EM through tilting

YZ Tan, PR Baldwin, JH Davis, JR Williamson… - Nature …, 2017 - nature.com
We present a strategy for tackling preferred specimen orientation in single-particle cryogenic
electron microscopy by employing tilts during data collection. We also describe a tool to …

Carotenoid metabolism at the intestinal barrier

J von Lintig, J Moon, J Lee, S Ramkumar - Biochimica et Biophysica Acta …, 2020 - Elsevier
Carotenoids exert a rich variety of physiological functions in mammals and are beneficial for
human health. These lipids are acquired from the diet and metabolized to apocarotenoids …

An overview of the top ten detergents used for membrane protein crystallization

A Stetsenko, A Guskov - Crystals, 2017 - mdpi.com
To study integral membrane proteins, one has to extract them from the membrane—the step
that is typically achieved by the application of detergents. In this mini-review, we summarize …

The role of SLC transporters for brain health and disease

YTK Nguyen, HTT Ha, TH Nguyen… - Cellular and Molecular Life …, 2022 - Springer
The brain exchanges nutrients and small molecules with blood via the blood–brain barrier
(BBB). Approximately 20% energy intake for the body is consumed by the brain. Glucose is …