Coupling of RNA polymerase II transcription elongation with pre-mRNA splicing

T Saldi, MA Cortazar, RM Sheridan… - Journal of molecular …, 2016 - Elsevier
Pre-mRNA maturation frequently occurs at the same time and place as transcription by RNA
polymerase II. The co-transcriptionality of mRNA processing has permitted the evolution of …

Dynamic integration of splicing within gene regulatory pathways

U Braunschweig, S Gueroussov, AM Plocik… - Cell, 2013 - cell.com
Precursor mRNA splicing is one of the most highly regulated processes in metazoan
species. In addition to generating vast repertoires of RNAs and proteins, splicing has a …

Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA

JM Simon, PG Giresi, IJ Davis, JD Lieb - Nature protocols, 2012 - nature.com
Eviction or destabilization of nucleosomes from chromatin is a hallmark of functional
regulatory elements in eukaryotic genomes. Historically identified by nuclease …

Enhancers as information integration hubs in development: lessons from genomics

C Buecker, J Wysocka - Trends in Genetics, 2012 - cell.com
Transcriptional enhancers are the primary determinants of tissue-specific gene expression.
Although the majority of our current knowledge of enhancer elements comes from detailed …

Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms

HL Zhou, G Luo, JA Wise, H Lou - Nucleic acids research, 2013 - academic.oup.com
The molecular mechanisms through which alternative splicing and histone modifications
regulate gene expression are now understood in considerable detail. Here, we discuss …

Transcription and splicing: A two‐way street

M Tellier, I Maudlin, S Murphy - Wiley Interdisciplinary Reviews …, 2020 - Wiley Online Library
RNA synthesis by RNA polymerase II and RNA processing are closely coupled during the
transcription cycle of protein‐coding genes. This coupling affords opportunities for quality …

Emerging roles of histone modifications and HDACs in RNA splicing

R Rahhal, E Seto - Nucleic acids research, 2019 - academic.oup.com
Histone modifications and RNA splicing, two seemingly unrelated gene regulatory
processes, greatly increase proteome diversity and profoundly influence normal as well as …

RNA polymerase II transcription elongation and Pol II CTD Ser2 phosphorylation: a tail of two kinases

EA Bowman, WG Kelly - Nucleus, 2014 - Taylor & Francis
The transition between initiation and productive elongation during RNA Polymerase II (Pol II)
transcription is a well-appreciated point of regulation across many eukaryotes. Elongating …

Splicing alterations in healthy aging and disease

BL Angarola, O Anczuków - Wiley Interdisciplinary Reviews …, 2021 - Wiley Online Library
Alternative RNA splicing is a key step in gene expression that allows generation of
numerous messenger RNA transcripts encoding proteins of varied functions from the same …

The role of DNA methylation and DNA methyltransferases in cancer

DJ Weisenberger, R Lakshminarasimhan… - … -Role and Function, 2022 - Springer
The malignant transformation of normal cells is driven by both genetic and epigenetic
changes. With the advent of next-generation sequencing and large-scale international …