How cooperative are protein folding and unfolding transitions?

P Malhotra, JB Udgaonkar - Protein Science, 2016 - Wiley Online Library
A thermodynamically and kinetically simple picture of protein folding envisages only two
states, native (N) and unfolded (U), separated by a single activation free energy barrier, and …

Polypeptide chain collapse and protein folding

JB Udgaonkar - Archives of biochemistry and biophysics, 2013 - Elsevier
Polypeptide chain collapse is an integral component of a protein folding reaction. In this
review, experimental characterization of the interplay of polypeptide chain collapse …

Structure is lost incrementally during the unfolding of barstar

GS Lakshmikanth, K Sridevi, G Krishnamoorthy… - nature structural …, 2001 - nature.com
Coincidental equilibrium unfolding transitions observed by multiple structural probes are
taken to justify the modeling of protein unfolding as a two-state, N⇌ U, cooperative process …

Continuous dissolution of structure during the unfolding of a small protein

SK Jha, D Dhar, G Krishnamoorthy, JB Udgaonkar - Biophysical Journal, 2009 - cell.com
An unresolved question in the field of protein folding is whether a protein unfolds in a two-
state (N↔ U) cooperative manner with only two species being populated during the entire …

Structural transformations of oligomeric intermediates in the fibrillation of the immunoglobulin light chain LEN

PO Souillac, VN Uversky, AL Fink - Biochemistry, 2003 - ACS Publications
LEN is a κIV immunoglobulin light chain variable domain from a patient suffering from
multiple myeloma but with no evidence of amyloid fibrils. However, fibrils are formed when …

Structure and dynamics of the α-lactalbumin molten globule: fluorescence studies using proteins containing a single tryptophan residue

S Chakraborty, V Ittah, P Bai, L Luo, E Haas… - Biochemistry, 2001 - ACS Publications
The fluorescence properties of three variants of α-lactalbumin (α-LA) containing a single
tryptophan residue were investigated under native, molten globule, and unfolded conditions …

19F NMR relaxation of buried tryptophan side chains suggest anisotropic rotational diffusion of the protein RfaH

MK Alam, RA Bhuvaneshwari, I Sengupta - Journal of Biomolecular NMR, 2024 - Springer
The recent application of 19F NMR in the study of biomolecular structure and dynamics has
made it a potentially attractive probe to complement traditional 15N/13C labelled probes for …

Mechanism of formation of a productive molten globule form of barstar

BR Rami, JB Udgaonkar - Biochemistry, 2002 - ACS Publications
Structural analysis of the initial steps in protein folding is difficult because of the swiftness
with which these steps occur. Hence, the link between initial polypeptide chain collapse and …

Unfolding of a small protein proceeds via dry and wet globules and a solvated transition state

SS Sarkar, JB Udgaonkar, G Krishnamoorthy - Biophysical journal, 2013 - cell.com
Dissecting a protein unfolding process into individual steps can provide valuable information
on the forces that maintain the integrity of the folded structure. Solvation of the protein core …

Near ultraviolet absorption arising from lysine residues in close proximity: a probe to monitor protein unfolding and aggregation in lysine-rich proteins

L Homchaudhuri, R Swaminathan - Bulletin of the Chemical …, 2004 - academic.oup.com
There is a need for an intrinsic spectral probe to monitor key events like protein unfolding
and aggregation in a rapid and unambiguous manner. Protein aggregation is an important …