Single-cell RNA-seq: advances and future challenges

AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …

Defining functional DNA elements in the human genome

M Kellis, B Wold, MP Snyder… - Proceedings of the …, 2014 - National Acad Sciences
With the completion of the human genome sequence, attention turned to identifying and
annotating its functional DNA elements. As a complement to genetic and comparative …

A double take on bivalent promoters

P Voigt, WW Tee, D Reinberg - Genes & development, 2013 - genesdev.cshlp.org
Histone modifications and chromatin-associated protein complexes are crucially involved in
the control of gene expression, supervising cell fate decisions and differentiation. Many …

Transcriptome profiling in human diseases: new advances and perspectives

A Casamassimi, A Federico, M Rienzo… - International journal of …, 2017 - mdpi.com
In the last decades, transcriptome profiling has been one of the most utilized approaches to
investigate human diseases at the molecular level. Through expression studies, many …

The human mitochondrial transcriptome

TR Mercer, S Neph, ME Dinger, J Crawford, MA Smith… - Cell, 2011 - cell.com
The human mitochondrial genome comprises a distinct genetic system transcribed as
precursor polycistronic transcripts that are subsequently cleaved to generate individual …

Transcription termination and the control of the transcriptome: why, where and how to stop

O Porrua, D Libri - Nature reviews Molecular cell biology, 2015 - nature.com
Transcription termination occurs when the polymerase is released after a transcription event,
thus delimitating transcription units; however, the functional importance of termination …

Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions

ENM Nolte-'t Hoen, HPJ Buermans… - Nucleic acids …, 2012 - academic.oup.com
Cells release RNA-carrying vesicles and membrane-free RNA/protein complexes into the
extracellular milieu. Horizontal vesicle-mediated transfer of such shuttle RNA between cells …

A comparative encyclopedia of DNA elements in the mouse genome

F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba… - Nature, 2014 - nature.com
The laboratory mouse shares the majority of its protein-coding genes with humans, making it
the premier model organism in biomedical research, yet the two mammals differ in …

Regulation of transcription by long noncoding RNAs

R Bonasio, R Shiekhattar - Annual review of genetics, 2014 - annualreviews.org
Over the past decade there has been a greater understanding of genomic complexity in
eukaryotes ushered in by the immense technological advances in high-throughput …

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

B Lenhard, A Sandelin, P Carninci - Nature Reviews Genetics, 2012 - nature.com
Promoters are crucial for gene regulation. They vary greatly in terms of associated regulatory
elements, sequence motifs, the choice of transcription start sites and other features. Several …