The expanding RNA polymerase III transcriptome

G Dieci, G Fiorino, M Castelnuovo, M Teichmann… - TRENDS in …, 2007 - cell.com
The role of RNA polymerase (Pol) III in eukaryotic transcription is commonly thought of as
being restricted to a small set of highly expressed, housekeeping non–protein-coding (nc) …

Transcription termination by nuclear RNA polymerases

P Richard, JL Manley - Genes & development, 2009 - genesdev.cshlp.org
Gene transcription in the cell nucleus is a complex and highly regulated process.
Transcription in eukaryotes requires three distinct RNA polymerases, each of which employs …

Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems

JE DiCarlo, JE Norville, P Mali, X Rios… - Nucleic acids …, 2013 - academic.oup.com
Abstract Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) and
CRISPR-associated (Cas) systems in bacteria and archaea use RNA-guided nuclease …

Cas-Designer: a web-based tool for choice of CRISPR-Cas9 target sites

J Park, S Bae, JS Kim - Bioinformatics, 2015 - academic.oup.com
We present Cas-Designer, a user-friendly program to aid researchers in choosing
appropriate target sites in a gene of interest for type II CRISPR/Cas-derived RNA-guided …

CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae

R Mans, HM van Rossum, M Wijsman… - FEMS yeast …, 2015 - academic.oup.com
A variety of techniques for strain engineering in Saccharomyces cerevisiae have recently
been developed. However, especially when multiple genetic manipulations are required …

[HTML][HTML] Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds

JG Zalatan, ME Lee, R Almeida, LA Gilbert… - Cell, 2015 - cell.com
Eukaryotic cells execute complex transcriptional programs in which specific loci throughout
the genome are regulated in distinct ways by targeted regulatory assemblies. We have …

Design, construction, and functional characterization of a tRNA neochromosome in yeast

D Schindler, RSK Walker, S Jiang, AN Brooks, Y Wang… - Cell, 2023 - cell.com
Here, we report the design, construction, and characterization of a tRNA neochromosome, a
designer chromosome that functions as an additional, de novo counterpart to the native …

Transfer RNAs: diversity in form and function

MD Berg, CJ Brandl - RNA biology, 2021 - Taylor & Francis
As the adaptor that decodes mRNA sequence into protein, the basic aspects of tRNA
structure and function are central to all studies of biology. Yet the complexities of their …

[HTML][HTML] Eukaryotic snoRNAs: a paradigm for gene expression flexibility

G Dieci, M Preti, B Montanini - Genomics, 2009 - Elsevier
Small nucleolar RNAs (snoRNAs) are one of the most ancient and numerous families of non-
protein-coding RNAs (ncRNAs). The main function of snoRNAs–to guide site-specific rRNA …

Multiplexed precision genome editing with trackable genomic barcodes in yeast

KR Roy, JD Smith, SC Vonesch, G Lin, CS Tu… - Nature …, 2018 - nature.com
Our understanding of how genotype controls phenotype is limited by the scale at which we
can precisely alter the genome and assess the phenotypic consequences of each …