Transforming clinical microbiology with bacterial genome sequencing

X Didelot, R Bowden, DJ Wilson, TEA Peto… - Nature Reviews …, 2012 - nature.com
Whole-genome sequencing of bacteria has recently emerged as a cost-effective and
convenient approach for addressing many microbiological questions. Here, we review the …

Epidemiology, clinical presentation, laboratory diagnosis, antimicrobial resistance, and antimicrobial management of invasive Salmonella infections

JA Crump, M Sjölund-Karlsson… - Clinical microbiology …, 2015 - Am Soc Microbiol
Salmonella enterica infections are common causes of bloodstream infection in low-resource
areas, where they may be difficult to distinguish from other febrile illnesses and may be …

Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

ME Carey, ZA Dyson, DJ Ingle, A Amir, MK Aworh… - Elife, 2023 - elifesciences.org
Background: The Global Typhoid Genomics Consortium was established to bring together
the typhoid research community to aggregate and analyse Salmonella enterica serovar …

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page… - Nature …, 2015 - nature.com
The emergence of multidrug-resistant (MDR) typhoid is a major global health threat affecting
many countries where the disease is endemic. Here whole-genome sequence analysis of …

Multidrug-resistance efflux pumps? not just for resistance

LJV Piddock - Nature Reviews Microbiology, 2006 - nature.com
It is well established that multidrug-resistance efflux pumps encoded by bacteria can confer
clinically relevant resistance to antibiotics. It is now understood that these efflux pumps also …

Clinically relevant chromosomally encoded multidrug resistance efflux pumps in bacteria

LJV Piddock - Clinical microbiology reviews, 2006 - Am Soc Microbiol
Efflux pump genes and proteins are present in both antibiotic-susceptible and antibiotic-
resistant bacteria. Pumps may be specific for one substrate or may transport a range of …

Nontyphoidal salmonellosis

D Acheson, EL Hohmann - Clinical infectious diseases, 2001 - academic.oup.com
Nontyphoidal Salmonella are important foodborne pathogens that cause gastroenteritis,
bacteremia, and subsequent focal infection. These hardy bacteria are especially problematic …

Antimicrobial resistance in developing countries. Part I: recent trends and current status

IN Okeke, R Laxminarayan, ZA Bhutta… - The Lancet infectious …, 2005 - thelancet.com
The global problem of antimicrobial resistance is particularly pressing in developing
countries, where the infectious disease burden is high and cost constraints prevent the …

Antibiotic resistance and typhoid

ZA Dyson, EJ Klemm, S Palmer… - Clinical Infectious …, 2019 - academic.oup.com
Multiple drug (antibiotic) resistance (MDR) has become a major threat to the treatment of
typhoid and other infectious diseases. Since the 1970s, this threat has increased in …

[PDF][PDF] A study of typhoid fever in five Asian countries: disease burden and implications for controls

RL Ochiai, CJ Acosta… - Bulletin of the world …, 2008 - SciELO Public Health
OBJECTIVE: To inform policy-makers about introduction of preventive interventions against
typhoid, including vaccination. METHODS: A population-based prospective surveillance …