Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Bioinformatic tools for microRNA dissection

MM Akhtar, L Micolucci, MS Islam, F Olivieri… - Nucleic acids …, 2016 - academic.oup.com
Recently, microRNAs (miRNAs) have emerged as important elements of gene regulatory
networks. MiRNAs are endogenous single-stranded non-coding RNAs (∼ 22-nt long) that …

SignaLink 2–a signaling pathway resource with multi-layered regulatory networks

D Fazekas, M Koltai, D Türei, D Módos, M Pálfy… - BMC systems …, 2013 - Springer
Background Signaling networks in eukaryotes are made up of upstream and downstream
subnetworks. The upstream subnetwork contains the intertwined network of signaling …

[HTML][HTML] The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops

D Papp, K Lenti, D Módos, D Fazekas, Z Dúl, D Türei… - FEBS letters, 2012 - Elsevier
NRF2 is a well-known, master transcription factor (TF) of oxidative and xenobiotic stress
responses. Recent studies uncovered an even wider regulatory role of NRF2 influencing …

Autophagy Regulatory Network—A systems-level bioinformatics resource for studying the mechanism and regulation of autophagy

D Türei, L Földvári-Nagy, D Fazekas, D Módos… - Autophagy, 2015 - Taylor & Francis
Autophagy is a complex cellular process having multiple roles, depending on tissue,
physiological, or pathological conditions. Major post-translational regulators of autophagy …

An in silicoanalysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma

Z Luo, L Zhang, Z Li, X Li, G Li, H Yu, C Jiang… - BMC medical …, 2012 - Springer
Background MicroRNAs (miRNAs) are small non-coding RNAs that participate in the
spatiotemporal regulation of messenger RNA (mRNA) and protein synthesis. Recent studies …

Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs

X Lai, U Schmitz, SK Gupta, A Bhattacharya… - Nucleic acids …, 2012 - academic.oup.com
MicroRNA (miRNA) target hubs are genes that can be simultaneously targeted by a
comparatively large number of miRNAs, a class of non-coding RNAs that mediate post …

[HTML][HTML] The synovium attenuates cartilage degeneration in KOA through activation of the Smad2/3-Runx1 cascade and chondrogenesis-related miRNAs

X Zhao, F Meng, S Hu, Z Yang, H Huang… - … Therapy-Nucleic Acids, 2020 - cell.com
Knee osteoarthritis (KOA) is a highly prevalent disabling joint disease in aged people.
Progressive cartilage degradation is the hallmark of KOA, but its deeper mechanism remains …

Bioinformatics accelerates the major tetrad: a real boost for the pharmaceutical industry

T Behl, I Kaur, A Sehgal, S Singh, S Bhatia… - International Journal of …, 2021 - mdpi.com
With advanced technology and its development, bioinformatics is one of the avant-garde
fields that has managed to make amazing progress in the pharmaceutical–medical field by …

RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules

E Cavalleri, A Cabri, M Soto-Gomez, S Bonfitto… - arXiv preprint arXiv …, 2023 - arxiv.org
The" RNA world" represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …