The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae

MR Gartenberg, JS Smith - Genetics, 2016 - academic.oup.com
Transcriptional silencing in Saccharomyces cerevisiae occurs at several genomic sites
including the silent mating-type loci, telomeres, and the ribosomal DNA (rDNA) tandem …

Chromosome boundary elements and regulation of heterochromatin spreading

J Wang, ST Lawry, AL Cohen, S Jia - Cellular and Molecular Life Sciences, 2014 - Springer
Chromatin is generally classified as euchromatin or heterochromatin, each with distinct
histone modifications, compaction levels, and gene expression patterns. Although the …

Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods

W Liu, Z Luo, Y Wang, NT Pham, L Tuck… - Nature …, 2018 - nature.com
Exogenous pathway optimization and chassis engineering are two crucial methods for
heterologous pathway expression. The two methods are normally carried out step-wise and …

Analyses of POL30 (PCNA) reveal positional effects in transient repression or bi-modal active/silent state at the sub-telomeres of S. cerevisiae

SM Sauty, K Yankulov - Epigenetics & Chromatin, 2023 - Springer
Background Classical studies on position effect variegation in Drosophila have
demonstrated the existence of bi-modal Active/Silent state of the genes juxtaposed to …

tRNA genes affect chromosome structure and function via local effects

O Hamdani, N Dhillon, THS Hsieh, T Fujita… - … and cellular biology, 2019 - Taylor & Francis
The genome is packaged and organized in an ordered, nonrandom manner, and specific
chromatin segments contact nuclear substructures to mediate this organization. tRNA genes …

Euglena mutabilis exists in a FAB consortium with microbes that enhance cadmium tolerance

E Kaszecki, D Palberg, M Grant, S Griffin… - International …, 2024 - Springer
Background Synthetic algal–fungal and algal–bacterial cultures have been investigated as a
means to enhance the technological applications of the algae. This inclusion of other …

Evaluation of drug-free methods for the detection of gene silencing in Saccharomyces cerevisiae

K Shaban, SM Sauty, A Fisher, A Cheng… - … and Cell Biology, 2023 - cdnsciencepub.com
Multiple studies in Saccharomyces cerevisiae have measured the levels of gene silencing
by inserting the URA3 gene at various loci and selecting against URA3-expressing cells by …

Rapid generation of hypomorphic mutations

LL Arthur, JJ Chung, P Janakirama, KM Keefer… - Nature …, 2017 - nature.com
Hypomorphic mutations are a valuable tool for both genetic analysis of gene function and for
synthetic biology applications. However, current methods to generate hypomorphic …

Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae

K Sneppen, IB Dodd - Epigenetics, 2015 - Taylor & Francis
How alternative chromatin-based regulatory states can be made stable and heritable in
order to provide robust epigenetic memory is poorly understood. Here, we develop a …

Transcriptional silencing in Saccharomyces cerevisiae: known unknowns

N Dhillon, RT Kamakaka - Epigenetics & Chromatin, 2024 - Springer
Transcriptional silencing in Saccharomyces cerevisiae is a persistent and highly stable form
of gene repression. It involves DNA silencers and repressor proteins that bind nucleosomes …