On the binding affinity of macromolecular interactions: daring to ask why proteins interact

PL Kastritis, AMJJ Bonvin - Journal of The Royal Society …, 2013 - royalsocietypublishing.org
Interactions between proteins are orchestrated in a precise and time-dependent manner,
underlying cellular function. The binding affinity, defined as the strength of these …

Binding mechanisms of intrinsically disordered proteins: theory, simulation, and experiment

L Mollica, LM Bessa, X Hanoulle, MR Jensen… - Frontiers in molecular …, 2016 - frontiersin.org
In recent years, protein science has been revolutionized by the discovery of intrinsically
disordered proteins (IDPs). In contrast to the classical paradigm that a given protein …

Plasma membrane preassociation drives β-arrestin coupling to receptors and activation

J Grimes, Z Koszegi, Y Lanoiselée, T Miljus, SL O'Brien… - Cell, 2023 - cell.com
Summary β-arrestin plays a key role in G protein-coupled receptor (GPCR) signaling and
desensitization. Despite recent structural advances, the mechanisms that govern receptor-β …

Eukaryotic transcription factors: paradigms of protein intrinsic disorder

L Staby, C O'Shea, M Willemoës, F Theisen… - Biochemical …, 2017 - portlandpress.com
Gene-specific transcription factors (TFs) are key regulatory components of signaling
pathways, controlling, for example, cell growth, development, and stress responses. Their …

G protein-coupled receptor-G protein interactions: a single-molecule perspective

D Calebiro, Z Koszegi, Y Lanoiselée… - Physiological …, 2021 - journals.physiology.org
G protein-coupled receptors (GPCRs) regulate many cellular and physiological processes,
responding to a diverse range of extracellular stimuli including hormones, neurotransmitters …

The alphabet of intrinsic disorder: II. Various roles of glutamic acid in ordered and intrinsically disordered proteins

VN Uversky - Intrinsically disordered proteins, 2013 - Taylor & Francis
The ability of a protein to fold into unique functional state or to stay intrinsically disordered is
encoded in its amino acid sequence. Both ordered and intrinsically disordered proteins …

Coupled folding and binding of the disordered protein PUMA does not require particular residual structure

JM Rogers, CT Wong, J Clarke - Journal of the American …, 2014 - ACS Publications
Many cellular proteins are 'disordered'in isolation. A subset of these intrinsically disordered
proteins (IDPs) can, upon binding another molecule, fold to a well-defined three …

Kinetics and thermodynamics of DNA, RNA, and hybrid duplex formation

B Rauzan, E McMichael, R Cave, LR Sevcik… - Biochemistry, 2013 - ACS Publications
The rates of duplex formation for two octamers of DNA (5′ d-CACGGCTC/5′ d-
GAGCCGTG and 5′ d-CACAGCAC/5′ d-GTGCTGTG), the homologous RNA, and both …

[HTML][HTML] The case for intrinsically disordered proteins playing contributory roles in molecular recognition without a stable 3D structure

VN Uversky, AK Dunker - F1000 biology reports, 2013 - ncbi.nlm.nih.gov
The classical 'lock-and-key'and 'induced-fit'mechanisms for binding both originated in
attempts to explain features of enzyme catalysis. For both of these mechanisms and for their …

Towards the physical basis of how intrinsic disorder mediates protein function

J Chen - Archives of biochemistry and biophysics, 2012 - Elsevier
Intrinsically disordered proteins (IDPs) are an important class of functional proteins that is
highly prevalent in biology and has broad association with human diseases. In contrast to …