Retention of duplicated genes in evolution

E Kuzmin, JS Taylor, C Boone - Trends in Genetics, 2022 - cell.com
Gene duplication is a prevalent phenomenon across the tree of life. The processes that lead
to the retention of duplicated genes are not well understood. Functional genomics …

Humanized yeast to model human biology, disease and evolution

AH Kachroo, M Vandeloo, BM Greco… - Disease models & …, 2022 - journals.biologists.com
For decades, budding yeast, a single-cellular eukaryote, has provided remarkable insights
into human biology. Yeast and humans share several thousand genes despite …

Full humanization of the glycolytic pathway in Saccharomyces cerevisiae

FJ Boonekamp, E Knibbe, MA Vieira-Lara, M Wijsman… - Cell Reports, 2022 - cell.com
Although transplantation of single genes in yeast plays a key role in elucidating gene
functionality in metazoans, technical challenges hamper humanization of full pathways and …

[HTML][HTML] InParanoiDB 9: ortholog groups for protein domains and full-length proteins

E Persson, ELL Sonnhammer - Journal of Molecular Biology, 2023 - Elsevier
Prediction of orthologs is an important bioinformatics pursuit that is frequently used for
inferring protein function and evolutionary analyses. The InParanoid database is a well …

[HTML][HTML] A Humanized Yeast Model for Studying TRAPP Complex Mutations; Proof-of-Concept Using Variants from an Individual with a TRAPPC1-Associated …

E Zykaj, C Abboud, P Asadi, S Warsame, H Almousa… - Cells, 2024 - mdpi.com
Variants in membrane trafficking proteins are known to cause rare disorders with severe
symptoms. The highly conserved transport protein particle (TRAPP) complexes are key …

Selected humanization of yeast U1 snRNP leads to global suppression of pre-mRNA splicing and mitochondrial dysfunction in the budding yeast

S Chalivendra, S Shi, X Li, Z Kuang, J Giovinazzo… - RNA, 2024 - rnajournal.cshlp.org
The recognition of the 5′ splice site (5′ ss) is one of the earliest steps of pre-mRNA
splicing. To better understand, the mechanism and regulation of 5′ ss recognition, we …

[HTML][HTML] Spontaneous and environment induced genomic alterations in yeast model

KJ Li, L Qi, YX Zhu, M He, Q Xiang, DQ Zheng - Cell Insight, 2024 - Elsevier
While genomic alterations are fundamental to biological evolution, enabling adaptation and
diversity, they can also result in detrimental outcomes, such as the development of genetic …

The First Yarrowia lipolytica Yeast Models Expressing Hepatitis B Virus X Protein: Changes in Mitochondrial Morphology and Functions

KK Epremyan, TN Goleva, AG Rogov, SV Lavrushkina… - Microorganisms, 2022 - mdpi.com
Chronic hepatitis B virus infection is the dominant cause of hepatocellular carcinoma, the
main cause of cancer death. HBx protein, a multifunctional protein, is essential for …

Humanization reveals pervasive incompatibility of yeast and human kinetochore components

G Ólafsson, MAB Haase… - G3: Genes, Genomes …, 2024 - academic.oup.com
Kinetochores assemble on centromeres to drive chromosome segregation in eukaryotic
cells. Humans and budding yeast share most of the structural subunits of the kinetochore …

Propagation of Mitochondria-Derived Reactive Oxygen Species within the Dipodascus magnusii Cells

AG Rogov, TN Goleva, KK Epremyan, II Kireev… - Antioxidants, 2021 - mdpi.com
Mitochondria are considered to be the main source of reactive oxygen species (ROS) in the
cell. It was shown that in cardiac myocytes exposed to excessive oxidative stress, ROS …