Bayesian model selection for generalized linear mixed models

S Xu, MAR Ferreira, EM Porter, CT Franck - Biometrics, 2023 - Wiley Online Library
We propose a Bayesian model selection approach for generalized linear mixed models
(GLMMs). We consider covariance structures for the random effects that are widely used in …

Mapping Genetic Variation in Arabidopsis in Response to Plant Growth-Promoting Bacterium Azoarcus olearius DQS-4T

F Plucani do Amaral, J Wang, J Williams, TR Tuleski… - Microorganisms, 2023 - mdpi.com
Plant growth-promoting bacteria (PGPB) can enhance plant health by facilitating nutrient
uptake, nitrogen fixation, protection from pathogens, stress tolerance and/or boosting plant …

BG2: Bayesian variable selection in generalized linear mixed models with nonlocal priors for non-Gaussian GWAS data

S Xu, J Williams, MAR Ferreira - BMC bioinformatics, 2023 - Springer
Background Genome-wide association studies (GWASes) aim to identify single nucleotide
polymorphisms (SNPs) associated with a given phenotype. A common approach for the …

BGWAS: Bayesian variable selection in linear mixed models with nonlocal priors for genome-wide association studies

J Williams, S Xu, MAR Ferreira - BMC bioinformatics, 2023 - Springer
Background Genome-wide association studies (GWAS) seek to identify single nucleotide
polymorphisms (SNPs) that cause observed phenotypes. However, with highly correlated …

A model selection paradox with implications to multiscale modeling

MAR Ferreira, MA Jaramillo… - Modeling Spatio-Temporal …, 2024 - taylorfrancis.com
Chapter 8 presents a Bayesian model selection paradox that has implications for multiscale
modeling. We consider the M-open case when the true model is not among the models …

[HTML][HTML] Weighted single-step genome-wide association study identified genomic regions and candidate genes for growth and reproductive traits in Wenchang …

R Zhu, Y Zhang, Y Jiang, Z Xu, Y Tai, Z Lian, Z Li… - Poultry Science, 2025 - Elsevier
Wenchang chicken is a native meat-type chicken breed in Hainan Province, China, known
for its tender meat, which is in high demand both domestically and internationally. Improving …

Variable selection for generalized linear mixed models and non-Gaussian Genome-wide associated study data

S Xu - 2024 - vtechworks.lib.vt.edu
Genome-wide associated study (GWAS) aims to identify associated single nucleotide
polymorphisms (SNP) for phenotypes. SNP has the characteristic that the number of SNPs is …

Bayesian variable selection for linear mixed models when p is much larger than n with applications in genome wide association studies

JRM Williams - 2023 - vtechworks.lib.vt.edu
Genome-wide association studies (GWAS) seek to identify single nucleotide polymorphisms
(SNP) causing phenotypic responses in individuals. Commonly, GWAS analyses are done …

[HTML][HTML] Bayesian bi-level variable selection for genome-wide survival study

E Lee, JG Ibrahim, H Zhu… - Genomics & …, 2023 - ncbi.nlm.nih.gov
Mild cognitive impairment (MCI) is a clinical syndrome characterized by the onset and
evolution of cognitive impairments, often considered a transitional stage to Alzheimer's …