Molecular dynamics simulation of protein and protein–ligand complexes

R Shukla, T Tripathi - Computer-aided drug design, 2020 - Springer
Biomacromolecules, including proteins and their complexes, adopt multiple conformations
that are linked to their biological functions. Though some of the structural heterogeneity can …

Identification and evaluation of glutathione conjugate gamma-l-glutamyl-l-cysteine for improved drug delivery to the brain

S Fatima, T Mohammad, DS Jairajpuri… - Journal of …, 2020 - Taylor & Francis
Glutathione (GU), an endogenous antioxidant tripeptide, is frequently transferred in the
human brain through N-methyl-d-aspartate receptor (NMDAR), profusely expressed at the …

Binding mechanism of caffeic acid and simvastatin to the integrin linked kinase for therapeutic implications: a comparative docking and MD simulation studies

M Gulzar, S Ali, FI Khan, P Khan, P Taneja… - Journal of …, 2019 - Taylor & Francis
Integrin linked kinase (ILK) is a Ser/Thr kinase, which regulates various integrin mediated
signaling pathways, and is involved in cell adhesion, migration and differentiation. Alteration …

Functional implications of pH-induced conformational changes in the Sphingosine kinase 1

P Gupta, FI Khan, S Roy, S Anwar, R Dahiya… - … Acta Part A: Molecular …, 2020 - Elsevier
Abstract Sphingosine kinase 1 (SphK1) catalyzes the conversion of sphingosine to
sphingosine-1-phosphate that acts as a bioactive signalling molecule, and regulates various …

Identification of high-affinity inhibitors of cyclin-dependent kinase 2 towards anticancer therapy

T Mohammad, S Batra, R Dahiya, MH Baig, IA Rather… - Molecules, 2019 - mdpi.com
Cyclin-dependent kinase 2 (CDK2) is an essential protein kinase involved in the cell cycle
regulation. The abnormal activity of CDK2 is associated with cancer progression and …

Exploring the promising potential of noscapine for cancer and neurodegenerative disease therapy through inhibition of integrin-linked kinase-1

MA Hakami, BS Alotaibi, SS Alkhalil, S Anwar… - International Journal of …, 2024 - Elsevier
Abstract Integrin-linked kinase (ILK), a β1-integrin cytoplasmic domain interacting protein,
supports multi-protein complex formation. ILK-1 is involved in neurodegenerative diseases …

Effect of pH on the structure and function of cyclin-dependent kinase 6

M Yousuf, A Shamsi, F Anjum, A Shafie, A Islam… - Plos one, 2022 - journals.plos.org
Cyclin-dependent kinase 6 (CDK6) is an important protein kinase that regulates cell growth,
development, cell metabolism, inflammation, and apoptosis. Its overexpression is associated …

Mechanistic insights into the urea-induced denaturation of kinase domain of human integrin linked kinase

SB Syed, FI Khan, SH Khan, S Srivastava… - International journal of …, 2018 - Elsevier
Abstract Integrin-linked kinase (ILK), a ubiquitously expressed intracellular Ser/Thr protein
kinase, plays a major role in the oncogenesis and tumour progression. The conformational …

Effect of pH on the structure and function of pyruvate dehydrogenase kinase 3: Combined spectroscopic and MD simulation studies

S Anwar, RK Kar, MA Haque, R Dahiya, P Gupta… - International journal of …, 2020 - Elsevier
Abstract Pyruvate dehydrogenase kinase-3 (PDK3) plays important role in the glucose
metabolism and is associated with cancer progression, and thus being considered as an …

[HTML][HTML] Structural characterization of Ectodomain G protein of respiratory Syncytial Virus and its Interaction with Heparan Sulfate: multi-spectroscopic and in Silico …

A Hamza, A Samad, MA Imam, MI Faizan, A Ahmed… - Molecules, 2021 - mdpi.com
The global burden of disease caused by a respiratory syncytial virus (RSV) is becoming
more widely recognized in young children and adults. Heparan sulfate helps in attaching the …