Detecting epistasis in human complex traits

WH Wei, G Hemani, CS Haley - Nature Reviews Genetics, 2014 - nature.com
Genome-wide association studies (GWASs) have become the focus of the statistical analysis
of complex traits in humans, successfully shedding light on several aspects of genetic …

Bioinformatics clouds for big data manipulation

L Dai, X Gao, Y Guo, J Xiao, Z Zhang - Biology direct, 2012 - Springer
As advances in life sciences and information technology bring profound influences on
bioinformatics due to its interdisciplinary nature, bioinformatics is experiencing a new leap …

An overview of SNP interactions in genome-wide association studies

P Li, M Guo, C Wang, X Liu, Q Zou - Briefings in functional …, 2015 - academic.oup.com
With the recent explosion in high-throughput genotyping technology, the amount and quality
of single-nucleotide polymorphism (SNP) data has increased exponentially. Therefore, the …

Cloud computing in healthcare and biomedicine

B Calabrese, M Cannataro - Scalable Computing: Practice and Experience, 2015 - scpe.org
High throughput platforms available in clinical settings or in research laboratories, such as
magnetic resonance imaging, microarray, mass spectrometry and next-generation …

A review on methods for detecting SNP interactions in high-dimensional genomic data

S Uppu, A Krishna, RP Gopalan - IEEE/ACM transactions on …, 2016 - ieeexplore.ieee.org
In this era of genome-wide association studies (GWAS), the quest for understanding the
genetic architecture of complex diseases is rapidly increasing more than ever before. The …

GWIS-model-free, fast and exhaustive search for epistatic interactions in case-control GWAS

B Goudey, D Rawlinson, Q Wang, F Shi, H Ferra… - BMC genomics, 2013 - Springer
Background It has been hypothesized that multivariate analysis and systematic detection of
epistatic interactions between explanatory genotyping variables may help resolve the …

High-performance computing to detect epistasis in genome scale data sets

A Upton, O Trelles, JA Cornejo-García… - Briefings in …, 2016 - academic.oup.com
It is becoming clear that most human diseases have a complex etiology that cannot be
explained by single nucleotide polymorphisms (SNPs) or simple additive combinations; the …

An empirical comparison of several recent epistatic interaction detection methods

Y Wang, G Liu, M Feng, L Wong - Bioinformatics, 2011 - academic.oup.com
Motivation: Many new methods have recently been proposed for detecting epistatic
interactions in GWAS data. There is, however, no in-depth independent comparison of these …

Genetic variants and their interactions in disease risk prediction–machine learning and network perspectives

S Okser, T Pahikkala, T Aittokallio - BioData mining, 2013 - Springer
A central challenge in systems biology and medical genetics is to understand how
interactions among genetic loci contribute to complex phenotypic traits and human diseases …

High performance computing enabling exhaustive analysis of higher order single nucleotide polymorphism interaction in Genome Wide Association Studies

B Goudey, M Abedini, JL Hopper, M Inouye… - … information science and …, 2015 - Springer
Genome-wide association studies (GWAS) are a common approach for systematic discovery
of single nucleotide polymorphisms (SNPs) which are associated with a given disease …