A practical guide to evaluating colocalization in biological microscopy

KW Dunn, MM Kamocka… - American Journal of …, 2011 - journals.physiology.org
Fluorescence microscopy is one of the most powerful tools for elucidating the cellular
functions of proteins and other molecules. In many cases, the function of a molecule can be …

ImageJ for microscopy

TJ Collins - Biotechniques, 2007 - Taylor & Francis
ImageJ will celebrate its tenth anniversary in September of this year. These past 10 years
have seen the Javabased open-source software mature into an invaluable laboratory tool. In …

Nuclear speckles–a driving force in gene expression

GP Faber, S Nadav-Eliyahu… - Journal of cell …, 2022 - journals.biologists.com
Nuclear speckles are dynamic membraneless bodies located in the cell nucleus. They
harbor RNAs and proteins, many of which are splicing factors, that together display complex …

Single-cell gene expression profiling

JM Levsky, SM Shenoy, RC Pezo, RH Singer - Science, 2002 - science.org
A key goal of biology is to relate the expression of specific genes to a particular cellular
phenotype. However, current assays for gene expression destroy the structural context. By …

The organization of replication and transcription

PR Cook - Science, 1999 - science.org
Models for replication and transcription often display polymerases that track like locomotives
along their DNA templates. However, recent evidence supports an alternative model in …

Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition

Y Shav-Tal, J Blechman, X Darzacq… - Molecular biology of …, 2005 - Am Soc Cell Biol
Nucleolar segregation is observed under some physiological conditions of transcriptional
arrest. This process can be mimicked by transcriptional arrest after actinomycin D treatment …

BioImageXD: an open, general-purpose and high-throughput image-processing platform

P Kankaanpää, L Paavolainen, S Tiitta, M Karjalainen… - Nature …, 2012 - nature.com
BioImageXD puts open-source computer science tools for three-dimensional visualization
and analysis into the hands of all researchers, through a user-friendly graphical interface …

Polarity-sensitive coumarins tailored to live cell imaging

G Signore, R Nifosi, L Albertazzi, B Storti… - Journal of the …, 2010 - ACS Publications
Polarity-dependent fluorescent probes are recently attracting interest for high-resolution cell
imaging. Following a stepwise rational approach, we prepared and tested a toolbox of new …

Association between active genes occurs at nuclear speckles and is modulated by chromatin environment

JM Brown, J Green, RP das Neves… - The Journal of cell …, 2008 - rupress.org
Genes on different chromosomes can be spatially associated in the nucleus in several
transcriptional and regulatory situations; however, the functional significance of such …

Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei

DA Jackson, FJ Iborra, EMM Manders… - Molecular biology of the …, 1998 - Am Soc Cell Biol
Using HeLa cells, we have developed methods to determine 1) the number of RNA
polymerases that are active at any moment, 2) the number of transcription sites, and 3) the …