The technological landscape and applications of single-cell multi-omics

A Baysoy, Z Bai, R Satija, R Fan - Nature Reviews Molecular Cell …, 2023 - nature.com
Single-cell multi-omics technologies and methods characterize cell states and activities by
simultaneously integrating various single-modality omics methods that profile the …

mRNAs, proteins and the emerging principles of gene expression control

C Buccitelli, M Selbach - Nature Reviews Genetics, 2020 - nature.com
Gene expression involves transcription, translation and the turnover of mRNAs and proteins.
The degree to which protein abundances scale with mRNA levels and the implications in …

Automated microfluidic platform for dynamic and combinatorial drug screening of tumor organoids

B Schuster, M Junkin, SS Kashaf… - Nature …, 2020 - nature.com
Abstract Three-dimensional (3D) cell culture technologies, such as organoids, are
physiologically relevant models for basic and clinical applications. Automated microfluidics …

An ultralocalized Cas13a assay enables universal and nucleic acid amplification-free single-molecule RNA diagnostics

T Tian, B Shu, Y Jiang, M Ye, L Liu, Z Guo, Z Han… - ACS …, 2020 - ACS Publications
Existing methods for RNA diagnostics, such as reverse transcription PCR (RT-PCR), mainly
rely on nucleic acid amplification (NAA) and RT processes, which are known to introduce …

Simultaneous epitope and transcriptome measurement in single cells

M Stoeckius, C Hafemeister, W Stephenson… - Nature …, 2017 - nature.com
High-throughput single-cell RNA sequencing has transformed our understanding of complex
cell populations, but it does not provide phenotypic information such as cell-surface protein …

Multiplexed single-cell proteomics using SCoPE2

AA Petelski, E Emmott, A Leduc, RG Huffman… - Nature protocols, 2021 - nature.com
Many biological systems are composed of diverse single cells. This diversity necessitates
functional and molecular single-cell analysis. Single-cell protein analysis has long relied on …

Scaling single-cell genomics from phenomenology to mechanism

A Tanay, A Regev - Nature, 2017 - nature.com
Three of the most fundamental questions in biology are how individual cells differentiate to
form tissues, how tissues function in a coordinated and flexible fashion and which gene …

Future of digital assays to resolve clinical heterogeneity of single extracellular vesicles

RTT Morales, J Ko - ACS nano, 2022 - ACS Publications
Extracellular vesicles (EVs) are complex lipid membrane vehicles with variable expressions
of molecular cargo, composed of diverse subpopulations that participate in the intercellular …

Revealing the vectors of cellular identity with single-cell genomics

A Wagner, A Regev, N Yosef - Nature biotechnology, 2016 - nature.com
Single-cell genomics has now made it possible to create a comprehensive atlas of human
cells. At the same time, it has reopened definitions of a cell's identity and of the ways in …

Single-cell proteomics

LF Vistain, S Tay - Trends in biochemical sciences, 2021 - cell.com
The inability to make broad, minimally biased measurements of a cell's proteome stands as
a major bottleneck for understanding how gene expression translates into cellular …