Engineered enzymes for the synthesis of pharmaceuticals and other high-value products

MT Reetz, G Qu, Z Sun - Nature Synthesis, 2024 - nature.com
Catalysis has a central role in organic synthetic methodology, especially in stereoselective
reactions. In many reactions, enantioselectivity is made possible through the use of chiral …

Learning from Protein Engineering by Deconvolution of Multi‐Mutational Variants

F Hollmann, J Sanchis, MT Reetz - … Chemie International Edition, 2024 - Wiley Online Library
This review analyzes a development in biochemistry, enzymology and biotechnology that
originally came as a surprise. Following the establishment of directed evolution of …

Structure-based investigation of a DNA aptamer targeting PTK7 reveals an intricate 3D fold guiding functional optimization

A He, L Wan, Y Zhang, Z Yan, P Guo, D Han… - Proceedings of the …, 2024 - pnas.org
DNA aptamers have emerged as novel molecular tools in disease theranostics owing to
their high binding affinity and specificity for protein targets, which rely on their ability to fold …

Exploring and learning the universe of protein allostery using artificial intelligence augmented biophysical and computational approaches

S Agajanian, M Alshahrani, F Bai, P Tao… - Journal of chemical …, 2023 - ACS Publications
Allosteric mechanisms are commonly employed regulatory tools used by proteins to
orchestrate complex biochemical processes and control communications in cells. The …

Creating new-to-nature carbon fixation: A guide

H Schulz-Mirbach, B Dronsella, H He, TJ Erb - Metabolic Engineering, 2024 - Elsevier
Synthetic biology aims at designing new biological functions from first principles. These new
designs allow to expand the natural solution space and overcome the limitations of naturally …

Rational enzyme design by reducing the number of hotspots and library size

Z Qin, B Yuan, G Qu, Z Sun - Chemical Communications, 2024 - pubs.rsc.org
Biocatalysts that are eco-friendly, sustainable, and highly specific have great potential for
applications in the production of fine chemicals, food, detergents, biofuels, pharmaceuticals …

[HTML][HTML] Protein representations: Encoding biological information for machine learning in biocatalysis

D Harding-Larsen, J Funk, NG Madsen… - Biotechnology …, 2024 - Elsevier
Enzymes offer a more environmentally friendly and low-impact solution to conventional
chemistry, but they often require additional engineering for their application in industrial …

Fishing for Catalysis: Experimental Approaches to Narrowing Search Space in Directed Evolution of Enzymes

LR Marshall, S Bhattacharya, IV Korendovych - JACS Au, 2023 - ACS Publications
Directed evolution has transformed protein engineering offering a path to rapid improvement
of protein properties. Yet, in practice it is limited by the hyper-astronomic protein sequence …

[HTML][HTML] Biomolecular NMR in the AI-assisted structural biology era: Old tricks and new opportunities

TK Karamanos, S Matthews - Biochimica et Biophysica Acta (BBA)-Proteins …, 2024 - Elsevier
Over the last 40 years nuclear magnetic resonance (NMR) spectroscopy has established
itself as one of the most versatile techniques for the characterization of biomolecules …

Protection of catalytic cofactors by polypeptides as a driver for the emergence of primordial enzymes

LI Gutierrez-Rus, G Gamiz-Arco… - Molecular Biology …, 2023 - academic.oup.com
Enzymes catalyze the chemical reactions of life. For nearly half of known enzymes, catalysis
requires the binding of small molecules known as cofactors. Polypeptide-cofactor complexes …