Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies
Background De novo transcriptome assembly of short reads is now a common step in
expression analysis of organisms lacking a reference genome sequence. Several software …
expression analysis of organisms lacking a reference genome sequence. Several software …
[HTML][HTML] YeATS-a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in …
The transcriptome provides a functional footprint of the genome by enumerating the
molecular components of cells and tissues. The field of transcript discovery has been …
molecular components of cells and tissues. The field of transcript discovery has been …
[HTML][HTML] Yeatsam analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools
S Chakraborty, PJ Martínez-García… - F1000Research, 2016 - ncbi.nlm.nih.gov
Background: The transcriptome, a treasure trove of gene space information, remains
severely under-used by current genome annotation methods. Methods: Here, we present an …
severely under-used by current genome annotation methods. Methods: Here, we present an …
Comparative Analysis of Strategies for De Novo Transcriptome Assembly in Prokaryotes: Streptomyces clavuligerus as a Case Study
C Caicedo-Montoya, L Pinilla, LF Toro, J Yepes-García… - High-throughput, 2019 - mdpi.com
The performance of software tools for de novo transcriptome assembly greatly depends on
the selection of software parameters. Up to now, the development of de novo transcriptome …
the selection of software parameters. Up to now, the development of de novo transcriptome …
Regulation of desiccation tolerance in Xerophyta seedlings and leaves
R Lyall - 2016 - open.uct.ac.za
A small, diverse group of angiosperms known as resurrection plants display vegetative
desiccation tolerance and can survive loss of up to 95% of cellular water, a feat only seen in …
desiccation tolerance and can survive loss of up to 95% of cellular water, a feat only seen in …
[PDF][PDF] status: awaiting peer review, http://f1000r. es/5hd
S Chakraborty, M Britton, J Wegrzyn, T Butterfield… - 2015 - researchgate.net
The transcriptome provides a functional footprint of the genome by enumerating the
molecular components of cells and tissues. The field of transcript discovery has been …
molecular components of cells and tissues. The field of transcript discovery has been …
次世代シーケンサーデータの解析手法第5 回アセンブル, マッピング, そしてQC
孫建強， 清水謙多郎， 門田幸二 - 日本乳酸菌学会誌, 2015 - jstage.jst.go.jp
抄録 次世代シーケンサー (以下, NGS) データの解析は, 大まかに ① データ取得, ②
クオリティコントロール (以下, QC), ③ アセンブルやマッピング, ④ 数値解析の 4 …
クオリティコントロール (以下, QC), ③ アセンブルやマッピング, ④ 数値解析の 4 …