Artificial intelligence to deep learning: machine intelligence approach for drug discovery

R Gupta, D Srivastava, M Sahu, S Tiwari, RK Ambasta… - Molecular …, 2021 - Springer
Drug designing and development is an important area of research for pharmaceutical
companies and chemical scientists. However, low efficacy, off-target delivery, time …

In silico methods and tools for drug discovery

B Shaker, S Ahmad, J Lee, C Jung, D Na - Computers in biology and …, 2021 - Elsevier
In the past, conventional drug discovery strategies have been successfully employed to
develop new drugs, but the process from lead identification to clinical trials takes more than …

Deep learning for drug design: an artificial intelligence paradigm for drug discovery in the big data era

Y Jing, Y Bian, Z Hu, L Wang, XQS Xie - The AAPS journal, 2018 - Springer
Over the last decade, deep learning (DL) methods have been extremely successful and
widely used to develop artificial intelligence (AI) in almost every domain, especially after it …

SwissTargetPrediction: a web server for target prediction of bioactive small molecules

D Gfeller, A Grosdidier, M Wirth, A Daina… - Nucleic acids …, 2014 - academic.oup.com
Bioactive small molecules, such as drugs or metabolites, bind to proteins or other macro-
molecular targets to modulate their activity, which in turn results in the observed phenotypic …

Shaping the interaction landscape of bioactive molecules

D Gfeller, O Michielin, V Zoete - Bioinformatics, 2013 - academic.oup.com
Motivation: Most bioactive molecules perform their action by interacting with proteins or other
macromolecules. However, for a significant fraction of them, the primary target remains …

Generative chemistry: drug discovery with deep learning generative models

Y Bian, XQ Xie - Journal of Molecular Modeling, 2021 - Springer
The de novo design of molecular structures using deep learning generative models
introduces an encouraging solution to drug discovery in the face of the continuously …

In silico methods to address polypharmacology: current status, applications and future perspectives

A Lavecchia, C Cerchia - Drug Discovery Today, 2016 - Elsevier
Highlights•Polypharmacology and its exploitation for drug discovery is drawing increasing
interest.•Computational approaches have great potential for predicting the …

AlzPlatform: an Alzheimer's disease domain-specific chemogenomics knowledgebase for polypharmacology and target identification research

H Liu, L Wang, M Lv, R Pei, P Li, Z Pei… - Journal of chemical …, 2014 - ACS Publications
Alzheimer's disease (AD) is one of the most complicated progressive neurodegeneration
diseases that involve many genes, proteins, and their complex interactions. No effective …

Polypharmacology browser PPB2: target prediction combining nearest neighbors with machine learning

M Awale, JL Reymond - Journal of chemical information and …, 2018 - ACS Publications
Here we report PPB2 as a target prediction tool assigning targets to a query molecule based
on ChEMBL data. PPB2 computes ligand similarities using molecular fingerprints encoding …

Applications of virtual screening in bioprospecting: facts, shifts, and perspectives to explore the chemo-structural diversity of natural products

K Santana, LD Do Nascimento, A Lima e Lima… - Frontiers in …, 2021 - frontiersin.org
Natural products are continually explored in the development of new bioactive compounds
with industrial applications, attracting the attention of scientific research efforts due to their …