Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Switches in bacteriophage lambda development

AB Oppenheim, O Kobiler, J Stavans… - Annu. Rev …, 2005 - annualreviews.org
The lysis-lysogeny decision of bacteriophage lambda (λ) is a paradigm for developmental
genetic networks. There are three key features, which characterize the network. First, after …

HIV‐1 tat protein stimulates transcription by binding to a U‐rich bulge in the stem of the TAR RNA structure.

C Dingwall, I Ernberg, MJ Gait, SM Green… - The EMBO …, 1990 - embopress.org
The HIV‐1 trans‐activator protein, tat, is an RNA binding protein with a high affinity for a U‐
rich bulge near the tip of the stem in the RNA stem‐loop structure encoded by the trans …

Termination and antitermination: RNA polymerase runs a stop sign

TJ Santangelo, I Artsimovitch - Nature Reviews Microbiology, 2011 - nature.com
Termination signals induce rapid and irreversible dissociation of the nascent transcript from
RNA polymerase. Terminators at the end of genes prevent unintended transcription into the …

Determination of cell fate selection during phage lambda infection

F St-Pierre, D Endy - … of the National Academy of Sciences, 2008 - National Acad Sciences
Bacteriophage lambda infection of Escherichia coli can result in distinct cell fate outcomes.
For example, some cells lyse whereas others survive as lysogens. A quantitative biophysical …

Structure, sequence, and position of the stem-loop in tar determine transcriptional elongation by tat through the HIV-1 long terminal repeat.

MJ Selby, ES Bain, PA Luciw… - Genes & …, 1989 - genesdev.cshlp.org
The human immunodeficiency virus (HIV-1)-encoded trans-activator (tat) increases HIV
gene expression and replication. Previously, we demonstrated that tat facilitates elongation …

A two-way street: regulatory interplay between RNA polymerase and nascent RNA structure

J Zhang, R Landick - Trends in biochemical sciences, 2016 - cell.com
The vectorial (5′-to-3′ at varying velocity) synthesis of RNA by cellular RNA polymerases
(RNAPs) creates a rugged kinetic landscape, demarcated by frequent, sometimes long …

Requirement for E. coli NusG protein in factor-dependent transcription termination

SL Sullivan, ME Gottesman - Cell, 1992 - cell.com
The 21 kd NusG protein is essential for E. coli viability. Cells depleted for NusG were
defective for factordependent transcription termination. Rho-induced polarity in the gal …

Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif

D Lazinski, E Grzadzielska, A Das - Cell, 1989 - cell.com
We have dissected the protein and nucleic acid determinants that direct a group of
transcriptional antiterminators to their specific target operons. These antiterminators, the N …

Transcriptional antitermination

J Greenblatt, JR Nodwell, SW Mason - Nature, 1993 - nature.com
Antiterminator proteins control gene expression by recognizing control signals near the
promoter and preventing transcriptional termination which would otherwise occur at sites …